CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.723e-42
Identity = 74/117 (63.25%), Postives = 93/117 (79.49%), Query Frame = 3
Query:   72 MGHHSCCNQQK-VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC+Q K VK+G W PEED+KL  YI  +GYG W  +P+ AGL RCGKSCRLRW+NYLRPDIRRG+F+  EE  I+ LH+++GN+W+ IA HLPGRTDNEIKNYWN+ ++KK+
Sbjct:    1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKL 117          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.351e-41
Identity = 70/116 (60.34%), Postives = 90/116 (77.59%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +    +G W+ EED++L  YI  HG GCW  +P+ AGL RCGKSCRLRWINYLRPD++RG F+ EE++LII LHS++GN+W+ IA  LPGRTDNEIKNYWN+ I++K+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.765e-41
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +  +KRG W+ EED+ L  YI ++G G W  +P+ AGL+RCGKSCRLRWINYLR D++RG  TPEEE+L++ LHS +GNRW+ IA HLPGRTDNEIKNYWNS + +K+
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.305e-41
Identity = 74/118 (62.71%), Postives = 93/118 (78.81%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            MG   CC++  VK+G W+ EED+KLI +I T+G  CW  VP+ AGL+RCGKSCRLRW NYLRPD++RG  +  EEKL+I LHS +GNRW+ IA+ LPGRTDNEIKN+WN+ IKKK+ K
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.759e-41
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 422
            MG   CC +  ++RG W+ EED+KL+ +IT +G  CW  +P+ AGL RCGKSCRLRW NYLRPD++RG F+  EE LI+ LH+ +GNRW+ IA+ LPGRTDNEIKNYWN+ +KK++R
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLR 117          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.494e-40
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            MG  +CC ++ VKRG W+ +ED+ L  Y+  HG G W EVP+KAGL+RCGKSCRLRW+NYLRP+IRRG  + +EE LII LH ++GNRW+ IA  LPGRTDNEIKNYWNS + ++
Sbjct:    1 MGRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR 115          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.328e-40
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +  +KRG W+ EED+ L  YI  HG G W  +P+ AGL RCGKSCRLRWINYLR D++RG  + EEE +II LH+ +GNRW+ IASHLPGRTDNEIKNYWNS + ++I
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 9.684e-40
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC +  +K+G W+PEED+ L+ +I  HG+G W  +P++AGL RCGKSCRLRWINYLRPDI+RG F+ EEE  II LH ++GNRW+ IA+ LPGRTDNEIKN W++ +KK++
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.806e-39
Identity = 69/115 (60.00%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   75 GHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            G   CC +  + RG W+P+ED +LI YI  HG+  W  +P++AGL RCGKSCRLRWINYLRPD++RG FT EEE+ II LH ++GN+W+ IA+ LPGRTDNEIKN WN+ +KKK+
Sbjct:    4 GRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKV 118          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.277e-39
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGC-WSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC++ KVKRG WSPEED KL  YI  +G G  W   P KAGL+RCGKSCRLRW+NYLRP+I+ G F+ EE+++I SL + +G+RW+ IA+HLPGRTDN+IKNYWN+ ++KK+
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKL 117          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB39_ARATH2.723e-4263.25Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB1_HORVU1.351e-4160.34Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB12_ARATH1.765e-4161.21Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
ODO1_PETHY2.305e-4162.71Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB2_PHYPA8.759e-4158.97Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYBC_MAIZE1.494e-4061.74Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYBP_MAIZE3.328e-4061.21Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB4_ORYSJ9.684e-4059.48Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_MAIZE4.806e-3960.00Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
RAX1_ARATH6.277e-3960.68Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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