CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.071e-38
Identity = 71/118 (60.17%), Postives = 87/118 (73.73%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            MG   CC++  VK+G W+PEED  L+ YI  HG G W  +P   GL RC KSCRLRW NYLRP I+RG FT  EEK+II L +++GNRWA IAS+LP RTDN+IKNYWN+ +KKK+ K
Sbjct:    1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEK 118          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.069e-38
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGC-WSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC++  VKRG WSPEED KL  YI   G G  W  +P KAGL+RCGKSCRLRW+NYLRP+IR G FT EE+ +I SL + +G+RW+ IA+HL GRTDN+IKNYWN+ +KKK+
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKL 117          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.637e-37
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGC-WSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            MG   CC++  VK+G WSPEED KL  YI   G G  W  +P+K GL+RCGKSCRLRW+NYLRP+I+ G F+ EEE +I SL+  +G+RW+ IA+ LPGRTDN+IKNYWN+ +KKK+
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 7.673e-37
Identity = 66/106 (62.26%), Postives = 86/106 (81.13%), Query Frame = 3
Query:   99 QKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            ++ ++GLWSPEEDEKL  +I ++G+ CW+ VP KAGLQR GKSCRLRWINYLRP ++R   + EEE+ I++ HS +GN+W+ IA  LPGRTDNEIKNYW+S +KKK
Sbjct:    8 ERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.002e-36
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 3
Query:   87 CCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            CC +  +KRG W+ EEDE L+ +I   G G W  +P++AGL RCGKSCRLRW+NYLRP ++RG  T +EE LI+ LH ++GNRW+ IA  +PGRTDNEIKNYWN+ ++KK+
Sbjct:   17 CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.916e-36
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            ++++ RG W+  ED+ L  YITTHG G WS +P +AGL+RCGKSCRLRW NYLRP I+RG  + +EE+LII LH+++GNRW+ IA  LPGRTDNEIKN+WNS ++K++ K
Sbjct:   11 REELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPK 120          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.974e-36
Identity = 61/108 (56.48%), Postives = 85/108 (78.70%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            + + K+GLW+ EED+ L+ Y+ THG G W+ + +K GL+RCGKSCRLRW+NYL P++ RG FT +EE LII LH ++GNRW+ IA  +PGRTDN++KNYWN+ + KK+
Sbjct:    9 EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 116          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.496e-36
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 3
Query:   72 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 422
            M    C  +  +KRG W+ EED+KL  Y+  +G   W  +P+ AGL RCGKSCRLRW+NYLRPD+++G  T  EE  II LH+ +GNRW+ IA H+PGRTDNEIKNYWN+ IKKK++
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLK 117          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.468e-35
Identity = 60/104 (57.69%), Postives = 83/104 (79.81%), Query Frame = 3
Query:  108 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            K+GLW+ EED+ L+ Y+  HG G W+ + +K GL+RCGKSCRLRW+NYL P+++RG FT +EE LII LH ++GNRW+ IA  +PGRTDN++KNYWN+ + KK+
Sbjct:   17 KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 120          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.468e-35
Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            VKRGLW PEED  L  Y+ THG G W+++  ++GL+R GKSCRLRW NYLRP+I+RG  +P+E+ LII +H ++GNRW+ IA  LPGRTDNE+KNYWN+ + KK
Sbjct:   12 VKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB06_ANTMA1.071e-3860.17Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
RAX2_ARATH4.069e-3861.54Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
RAX3_ARATH2.637e-3758.97Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
LAF1_ARATH7.673e-3762.26Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB5_ARATH1.002e-3657.66Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
TT2_ARATH2.916e-3660.00Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB23_ARATH4.974e-3656.48Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA6.496e-3656.41Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
WER_ARATH2.468e-3557.69Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB82_ARATH2.468e-3560.58Transcription factor MYB82 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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