CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.468e-35
Identity = 68/115 (59.13%), Postives = 87/115 (75.65%), Query Frame = 3
Query:   90 CNQQ--KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWN-SWIKKKIRK 425
            CN    +V++G W+ EED  LI +I+ HG G W+ +   AGL+R GKSCRLRW+NYLRPD+RRG  TPEE+ LI+ LH+  GNRW+ IA HLPGRTDNEIKNYWN + I+K I++
Sbjct:    6 CNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQ 120          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.468e-35
Identity = 64/110 (58.18%), Postives = 85/110 (77.27%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            + +V++G W+ EED  LI YI  HG G W+ + + AGL+R GKSCRLRW+NYLRPD+RRG  TPEE+ +I+ LH+  GNRW+ IA HLPGRTDNEIKN+W + I+K I++
Sbjct:   17 EAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQ 126          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.210e-35
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 3
Query:   90 CNQQ--KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            CN Q  +V++G W+ EED  LI YI  HG G W+ +   AGL+R GKSCRLRW+NYLRPD+RRG  TPEE+ LI+ LH+  GNRW+ IA  LPGRTDNEIKNYW + I+K + +
Sbjct:    6 CNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ 119          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.499e-35
Identity = 60/107 (56.07%), Postives = 82/107 (76.64%), Query Frame = 3
Query:   99 QKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            Q+ K+GLW+ EED  L+ Y+  HG G W+ +  K GL+RCGKSCRLRW+NYL P++ +G FT +EE LII LH ++GNRW+ IA  +PGRTDN++KNYWN+ + KK+
Sbjct:   12 QEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.499e-35
Identity = 60/107 (56.07%), Postives = 82/107 (76.64%), Query Frame = 3
Query:   99 QKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            Q+ K+GLW+ EED  L+ Y+  HG G W+ +  K GL+RCGKSCRLRW+NYL P++ +G FT +EE LII LH ++GNRW+ IA  +PGRTDN++KNYWN+ + KK+
Sbjct:   12 QEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.600e-34
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 413
            +K+G W+  ED  L+ Y+  HG G W+ V +  GL RCGKSCRLRW N+LRP++++G FT EEE+LII LHS +GN+WA +A+HLPGRTDNEIKNYWN+ IK+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.600e-34
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 413
            +K+G W+  ED  L+ Y+  HG G W+ V +  GL RCGKSCRLRW N+LRP++++G FT EEE+LII LHS +GN+WA +A+HLPGRTDNEIKNYWN+ IK+
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.831e-30
Identity = 55/104 (52.88%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +++G W+ EED  L + I  +G G W +VP +AGL RC KSCRLRW+NYL+P I+RG+F+ +E  L++ LH ++GNRW+ IA  LPGRT N++KNYWN+ + KK
Sbjct:    8 LRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +++G W+ EED  L + I  +G G W +VP +AGL RC KSCRLRW+NYL+P I+RG+ + +E  L++ LH ++GNRW+ IA  LPGRT N++KNYWN+ + KK
Sbjct:    8 LRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.085e-30
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +++G W+ EED  L   I  +G G W +VP +AGL RC KSCRLRW+NYL+P I+RGR + +E  L++ LH ++GNRW+ IA  LPGRT N++KNYWN+ + KK
Sbjct:    8 LRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB40_ANTMA2.468e-3559.13Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH2.468e-3558.18Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA4.210e-3558.77Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
GL1_ARATH5.499e-3556.07Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY5.499e-3556.07Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GAM1_ORYSJ1.600e-3460.19Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI1.600e-3460.19Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MY114_ARATH1.831e-3052.88Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB75_ARATH5.326e-3051.92Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB90_ARATH9.085e-3052.88Transcription factor MYB90 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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