CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 9.085e-30
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            Q++ ++G W+ +ED  L+ ++   G   W  V + +GL R GKSCRLRW+NYL P ++RG+ TP+EE+L++ LH+  GNRW+ IA  LPGRTDNEIKNYW + ++KK ++
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.452e-29
Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            ++++++G W+ +ED +L+  +   G   W  + + +GL R GKSCRLRW+NYL P ++RGR +P EE+LI+ LH+  GNRW+ IA  LPGRTDNEIKNYW + ++KK ++
Sbjct:    5 REEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.691e-29
Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  108 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            ++G W+ +ED  L+ ++   G   W  + + +GL R GKSCRLRW+NYL P ++RG+ TP+EE+L++ LH+  GNRW+ IA  LPGRTDNEIKNYW + ++KK ++
Sbjct:    8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.004e-28
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +++G W+ EED  L + I  +G G W  VP + GL RC KSCRLRW+NYL+P I+RG+   +E  L++ LH ++GNRW+ IA  LPGRT N++KNYWN+ + KK
Sbjct:    8 LRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.238e-28
Identity = 54/110 (49.09%), Postives = 79/110 (71.82%), Query Frame = 3
Query:   96 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            ++++++G W+ +ED +L+  +   G   W  V + +GL R GKSCRLRW+NYL P ++ GR +P+EE LII LH+  GNRW+ IA  LPGRTDNEIKNYW + ++KK ++
Sbjct:    5 REEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  120 WSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNS 401
            W PEED  L  Y+  +G   W+ VP++ GL     SCR RW+N+L+P +++G FT EEEK ++ LH+V+GN+W+ +A   PGRTDNEIKN+WN+
Sbjct:   21 WKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNA 114          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.367e-24
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            +G W+ EEDEK+I  +  +G   W+ + ++    R GK CR RW N+L P++++  +T EE+++I   H V+GNRWA IA  LPGRTDN +KN+WNS IK+K+
Sbjct:   83 KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLR-GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.271e-23
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            +G W+ EED+K+I  +  +G   W+ + +     R GK CR RW N+L P++++  +T EE+++I   H V+GNRWA IA  LPGRTDN +KN+WNS IK+K+
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 3
Query:   81 HSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            H   + + VK G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L PD+++  +T EE+++I S H  +GNRWA IA  LPGRTDN IKN+WNS +K+K+ +
Sbjct:   77 HKVLSPELVK-GPWTKEEDQRVIELVHKYGPKKWSIIAKHLK-GRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQ 189          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            +G W+ EED+K+I  +  +G   W+ + +     R GK CR RW N+L P++++  +T EE+++I   H V+GNRWA IA  LPGRTDN +KN+WNS IK+K+
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB59_ARATH9.085e-3049.09Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ3.452e-2948.18Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYB48_ARATH7.691e-2949.06Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MY113_ARATH1.004e-2850.96Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYBA1_ORYSJ2.238e-2849.09Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MY104_ARATH4.666e-2650.00Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYBB_XENLA4.367e-2446.60Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK1.271e-2345.63Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBA_XENLA1.660e-2344.35Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBB_MOUSE2.167e-2345.63Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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