CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            +G W+ EED+K+I  +  +G   W+ + +     R GK CR RW N+L P++++  +T EE+++I   H V+GNRWA IA  LPGRTDN +KN+WNS IK+K+
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23
Identity = 44/108 (40.74%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  102 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            ++ +G W+ EED+++I ++  +G   WS++ +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN +KN+WNS +++K+ +
Sbjct:   18 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQ 124          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   39 NKRKGLLINLIMGHHSCCNQQKVKR-----GLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            NK K  L   +    S  + ++ K+     G W+ EED  LI+ +  +G   WS + +     R GK CR RW N+LRPDI++  ++ EE++++I  H  +GN+WA IA  LPGRT+N IKN+WN+  +++  K
Sbjct:  188 NKTKPFLTRKLSSSSSSSSWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 320          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   87 KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLK-GRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   87 KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLK-GRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   92 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.189e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +G WSPEEDE+L R +  +G   W+ +  K+   R GKSCRLRW N L P +    F+ EE++ I   H+  GN+WA IA  L GRTDN +KN+WNS +K+K
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVI-SKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYBB_HUMAN2.167e-2345.63Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYB_AVIMB6.306e-2340.74Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB98_ARATH1.076e-2238.06Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYBA_MOUSE3.130e-2242.86Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN3.130e-2242.86Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYB_MOUSE5.338e-2242.86Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN5.338e-2242.86Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK5.338e-2242.86Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN5.338e-2242.86Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYB44_ARATH1.189e-2148.04Transcription factor MYB44 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
back to top