CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287239_ssr448 microsatellite CX287239_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   84 SCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            S  N+ K K G W+ EEDEKL   +  HG   W  +     L R G+ CR RW N L P I+R  +T EE+++I+  HS  GN+WA I+  LPGRT+  IKN+WNS +K+K+ K
Sbjct:  749 SSSNESKAK-GHWTKEEDEKLRSLVDLHGTKRWKYIASLLCL-RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSK 860          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.029e-21
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 413
            +G W+ +ED+K+I  + T+G   WS++       R GK CR RW N+L P+I++  ++ EE+++I   H++ GN+WA IA  LPGRTDN IKN+WNS +K+
Sbjct:  201 KGAWTKDEDDKVIELVKTYGPKKWSDIALHLK-GRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR 300          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.029e-21
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T  E+++I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K+ +
Sbjct:   87 KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLK-GRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +G W+ EED+++I  +  +G   WS + +     R GK CR RW N+L P++++  +T EE++ I   H  +GNRWA IA  LPGRTDN IKN+WNS +++K
Sbjct:   89 KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            + +G W  EED KL+  +   G   WS +  K    R GK CR RW N+L P++R+  +TPEE+K+II  H+ +GN+W  I+  L GR  N IKN+WNS + KKI
Sbjct:  275 IVKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIP-GRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKI 378          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 419
            +G WS EED  +I  +  +G   WS + +     R GK CR RW N+L P I +  +T EEE  +I  H + GN+WA +   LPGR+DN IKN+WNS +KKK+
Sbjct:   87 KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKL 188          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.480e-19
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  111 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +G W+ +ED+ +I+ +   G   W+ +       R GK CR RW N+L P+I++  +T +E+++I   H  +GN+WA IA  LPGRTDN IKN+WNS +++K
Sbjct:  136 KGPWTRDEDDMVIKLVRNFGPKKWTLIARYLN-GRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  108 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG--LQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +R  W PEED  L+ Y+  +G   WS V ++    L R  KSC  RW NYLRP I++G  T +E++L+I L +  GN+W  IA+ +PGRT   +  +W  + +K+ R+
Sbjct:    8 ERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 115          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  108 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEK--AGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +R  W PEED  L  Y+  +G   W  V ++    L R  KSC  RW NYLRP I++G  T EE++L+I L +  GN+W  IA+ +PGRT   +  +W  + +K+ R+
Sbjct:    3 ERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 3
Query:   93 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            N    +RG WS  ED++LI+ +   G G W  V    G  R  K CR RW   L+P +  G  T EE  +I+    + G RWA IA  L GR+DN +KNYWN    +K
Sbjct:    3 NMPDQRRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGT-RTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRK 109          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYBAA_DICDI1.553e-2145.61Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYBA_DICDI2.029e-2144.55Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYBA_CHICK2.029e-2141.90Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB_XENLA2.649e-2144.12Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBQ_DICDI2.649e-2144.76Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MB3R1_ARATH3.460e-2144.66Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYB_DROME2.480e-1941.18Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
RS2_ORYSJ1.361e-1739.81Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE5.171e-1739.81Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYB1_NEUCR2.566e-1640.74Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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