CX287239

Overview
NameCX287239
Unique NameCX287239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.717e-16
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  108 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG--LQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425
            +R  WS EED  L  Y+   G   W  V E+    L R  KSC  RW NYL+P I++G  T EE++L+I L    GN+W  IA+ +PGRT   +  +W  + +K+ R+
Sbjct:    3 ERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: SNPC4_MOUSE (snRNA-activating protein complex subunit 4 OS=Mus musculus GN=Snapc4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            +KRG W+PEED KL++ +  +G   W ++ E+    R    CR R+I  L   +++GR+  +EE+ +I L    G   WA IAS LP R+ ++  + W    +KK
Sbjct:  399 LKRGFWAPEEDAKLLQAVAKYGAQDWFKIREEVP-GRSDAQCRDRYIRRLHFSLKKGRWNAKEEQQLIQLIEKYGVGHWARIASELPHRSGSQCLSKWKILARKK 502          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSW 404
            +K+G WSPEED+ LI  +  +G G W  +       R    CR R+ N L P + + R+TP+E+K +  + + VG  +W+ +A  +  RTDN+    W  W
Sbjct:  650 IKKGRWSPEEDQCLINAVNAYGKGNWILIKNHVK-GRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQC---WRRW 746          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  120 WSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTD 374
            W+ EED+KL + ++ +G   W  +  + G Q+ G  C   W   L PDIR+G +  +EE+L++ L +  G+ W  IA  +  RTD
Sbjct:   70 WTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTD 154          
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: SNPC4_HUMAN (snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 3
Query:    3 RILSYIEGED*LNKRKGLLINLIMGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKK 416
            RI+ Y+EG D +        +L  G         +K+G W+PEED KL++ +  +G   W ++ E+    R    CR R++  L   +++GR+  +EE+ +I L    G   WA IAS LP R+ ++  + W   + KK
Sbjct:  374 RIVYYMEGRDSMQLIYRWTKSLDPG---------LKKGYWAPEEDAKLLQAVAKYGEQDWFKIREEVP-GRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIASELPHRSGSQCLSKWKIMMGKK 502          
The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
AS1_ARATH5.717e-1639.81Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
SNPC4_MOUSE8.543e-1235.24snRNA-activating protein complex subunit 4 OS=Mus ... [more]
MYBL_DICDI1.116e-1134.65Myb-like protein L OS=Dictyostelium discoideum GN=... [more]
MYBM_DICDI4.240e-1135.29Myb-like protein M OS=Dictyostelium discoideum GN=... [more]
SNPC4_HUMAN7.232e-1130.94snRNA-activating protein complex subunit 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC01006C11SK Veg1 Citrus clementina cDNA clone C01006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bp
AGAGAATTCTGTCATATATAGAAGGAGAGGATTAATTGAACAAGAGAAAA
GGCTTATTAATTAACTTAATTATGGGTCACCACTCTTGTTGCAATCAACA
GAAGGTGAAGAGAGGCCTTTGGTCACCCGAGGAAGACGAAAAGCTCATCA
GATATATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTGCCTGAAAAA
GCTGGCCTTCAAAGATGCGGTAAGAGTTGTCGGTTAAGATGGATAAATTA
TTTGAGGCCGGATATCAGAAGAGGAAGATTTACTCCTGAGGAGGAGAAGC
TGATTATTAGCCTTCATAGTGTTGTAGGAAACAGATGGGCGCATATTGCA
AGTCACTTGCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAATTC
ATGGATCAAAAAGAAGATACGAAAGCCTTCGACGGTGCCTCCTCCTTCCA
CCACCACCAACACACCTAGCAGTGCTACTGAGCATTCCCAAGTAAATTAT
GCC
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