CX287239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.717e-16 Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 108 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG--LQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 425 +R WS EED L Y+ G W V E+ L R KSC RW NYL+P I++G T EE++L+I L GN+W IA+ +PGRT + +W + +K+ R+ Sbjct: 3 ERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: SNPC4_MOUSE (snRNA-activating protein complex subunit 4 OS=Mus musculus GN=Snapc4 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12 Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 Query: 105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKK 416 +KRG W+PEED KL++ + +G W ++ E+ R CR R+I L +++GR+ +EE+ +I L G WA IAS LP R+ ++ + W +KK Sbjct: 399 LKRGFWAPEEDAKLLQAVAKYGAQDWFKIREEVP-GRSDAQCRDRYIRRLHFSLKKGRWNAKEEQQLIQLIEKYGVGHWARIASELPHRSGSQCLSKWKILARKK 502
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11 Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3 Query: 105 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSW 404 +K+G WSPEED+ LI + +G G W + R CR R+ N L P + + R+TP+E+K + + + VG +W+ +A + RTDN+ W W Sbjct: 650 IKKGRWSPEEDQCLINAVNAYGKGNWILIKNHVK-GRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQC---WRRW 746
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11 Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 3 Query: 120 WSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTD 374 W+ EED+KL + ++ +G W + + G Q+ G C W L PDIR+G + +EE+L++ L + G+ W IA + RTD Sbjct: 70 WTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTD 154
BLAST of CX287239 vs. ExPASy Swiss-Prot
Match: SNPC4_HUMAN (snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11 Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 3 Query: 3 RILSYIEGED*LNKRKGLLINLIMGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKK 416 RI+ Y+EG D + +L G +K+G W+PEED KL++ + +G W ++ E+ R CR R++ L +++GR+ +EE+ +I L G WA IAS LP R+ ++ + W + KK Sbjct: 374 RIVYYMEGRDSMQLIYRWTKSLDPG---------LKKGYWAPEEDAKLLQAVAKYGEQDWFKIREEVP-GRSDAQCRDRYLRRLHFSLKKGRWNLKEEEQLIELIEKYGVGHWAKIASELPHRSGSQCLSKWKIMMGKK 502 The following BLAST results are available for this feature:
BLAST of CX287239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287239 ID=CX287239; Name=CX287239; organism=Citrus clementina; type=EST; length=503bpback to top |