CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    3 GFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEE 401
            G +L     G++TP H L SGVG F+G++ EII+TF L++TVYAT  DPKKGS+  + P+  GF+VGANIL  GPFSG SMNPARSFGPA+ SGD+T+ W+YWVGPL+GGGLAG +Y   ++   H P+   E
Sbjct:  116 GAVLVQFCTGVATPTHGL-SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVASSE 247          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 77/132 (58.33%), Postives = 101/132 (76.52%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEEA 404
            LL ++T G S P H +A+G+G  +G++ EI++TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+VSGD++  W+YWVGPL+GG LAG IY   FI  S+ P P  E+
Sbjct:  118 LLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFI-GSYAPAPTTES 248          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 83/136 (61.03%), Postives = 101/136 (74.26%), Query Frame = 3
Query:    9 LLSYLTGGL-STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI-VRSHVPIPYEEARF 410
            LL+ LTGG  + PVH  A GVG  + +  E +LTFSLLF VYAT+VD ++ ++  LGPLL G VVGANILAGGP+SGASMNPARSFGPAL +G+W DHW+YWVGPLIGG LAG +YE  F+    H P+P  +  F
Sbjct:  117 LLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRR-AVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIGGPLAGLVYEGLFMGPPGHEPLPRNDGDF 251          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.358e-41
Identity = 82/134 (61.19%), Postives = 100/134 (74.63%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVR--SHVPIPYEE 401
            FLL +LTGGL+TPVH LA GVG  QG++ E + TFSLLF +YATI+DP+K  + G GPLLTG +VGAN +AG   SGASMNPARSFGPA+ SG WT HWVYWVGPL GG LA  +YE  F+    +H  +P ++
Sbjct:  116 FLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAAPTHDLLPQQD 248          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41
Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI-VRSHVPIP 392
            FLLS+ TGG   P   L++GVG    +++EI++TF L++TVYAT VDPK GS+  + P+  GF+VGANILAGG FSGASMNPA +FGPA+VS  WT+HWVYW GPLIGGGLAG IY+  FI   +H  +P
Sbjct:  120 FLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFIDENAHEQLP 249          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 78/129 (60.47%), Postives = 95/129 (73.64%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIP 392
            FLL + TGGL+T    L +GV  ++ ++ EI++TF L++TVYAT VDPKKGS+  + P+  GF+VGANIL GG F GASMNPA SFGPALVS  W   WVYWVGPLIGGGLAG IYE  FI  +H  +P
Sbjct:  119 FLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIGGGLAGVIYEVLFISHTHEQLP 246          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 72/120 (60.00%), Postives = 94/120 (78.33%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LL ++T G S P H +++G+G  +G++ EI++TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+VSGD +  W+YWVGPL+GG LAG IY   FI
Sbjct:  118 LLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFI 237          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEE 401
            FLL Y+T G + P H + SG+   +G++ EI++TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+ +G++  +WVYWVGPL+GGGLAG +Y   FI  S+ P+  +E
Sbjct:  117 FLLQYVTHGQAIPTHGV-SGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVGGGLAGLVYGDVFIA-SYQPVGQQE 246          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.772e-39
Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 3
Query:    6 FLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIP 392
            FLL + TGG +T    L +GV  ++ ++ EI++TF L++TVYAT VDPKKGS+  + P+  GF+VGANIL GG F GASMNPA SFGPALVS +W   WVYWVGPLIGGGLAG IYE  FI  +H  +P
Sbjct:  119 FLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQWVYWVGPLIGGGLAGVIYELLFISHTHEQLP 246          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.015e-38
Identity = 70/124 (56.45%), Postives = 96/124 (77.42%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSH 380
            LL ++T G + P H +A G+   +G+++E+++TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+ +GD+  +WVYWVGPL+GGGLAG +Y   FI  S+
Sbjct:  118 LLGFVTHGKAIPTHAVA-GISELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWVGPLVGGGLAGLVYGDVFIGGSY 240          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TIP22_ORYSJ2.854e-4157.14Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP22_ARATH2.854e-4158.33Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP43_ORYSJ4.868e-4161.03Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE6.358e-4161.19Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP12_ARATH8.304e-4160.00Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ORYSJ9.181e-4060.47Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP23_ARATH1.199e-3960.00Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP23_MAIZE1.566e-3956.06Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP11_MAIZE7.772e-3959.69Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP21_MAIZE1.015e-3856.45Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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