CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = 3
Query:   21 LTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            ++GG++ P       VG  Q    E I++F+L+F V A   D +  ++  L  +  G  V  NIL  GP + ASMNP R+ GPA+ + ++   WVY   P++G  +    Y
Sbjct:  183 MSGGVTVPT------VGLSQAFALEFIISFNLMFVVTAVATDTR--AVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTY 285          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 3
Query:   21 LTGGLSTPVHTLASGVGY--FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDW--TDHWVYWVGPLIGGGLAGFIYEQF 362
            L+GG ++  + L S  GY     ++ E+++TF  L  +  +     + +  G  P+  G  +    L   P +  S+NPARS GPAL  GDW   + W++W+ P++G  LAG  Y  F
Sbjct:  113 LSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGST---DRRAPKGFAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPALFVGDWAIAELWLFWLAPIVGAALAGLFYHAF 227          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   72 YFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIG--GGLAGFIYEQFFIVRSH 380
            ++  ++ EII+TF+++F   A   D +  ++  L  L  G  V    +  G  SG SMNPAR+ GPAL S  +T  W+Y++GP++G   G   + Y +F    SH
Sbjct:  161 HWHSLVIEIIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASNLYTGLWIYFLGPVLGTLSGAWTYTYIRFEEAPSH 263          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   39 TPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQ 359
            +P +T   G+G       E++ TF L++TV++   D K+ + D     L PL  GF V    LA  P +G  +NPARS G A++  +   W  HW++WVGP  G  LA  +Y Q
Sbjct:  177 SPGYTKGDGLGA------EVVGTFVLVYTVFSA-TDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAA-VYHQ 282          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 3
Query:   15 SYLTGGLSTPVH---TLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIG 329
            S+   G+  PV+        VG  +    E + TF LLF + A   DP   ++  L  +  G  +  N L  GP +GASMNPAR+ GPA+ +G +T  WVY V   +G
Sbjct:  187 SFAVKGMYHPVNPGIVTVPKVGTVEAFFLEFVTTFVLLFIITALATDPN--AVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGRYTQIWVYLVATPLG 292          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 3
Query:   36 STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            +TP  ++A      Q    E +++F L+F V     D +  +I  L  L  G  V  N+L  GP +GASMNPARS GPA+V+G +   WVY   P+ G     + Y
Sbjct:  179 TTPAGSMA------QAAALEFVISFFLMFVVSGVATDNR--AIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVYVAAPVSGTVCGAWAY 276          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 3
Query:   72 YFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            ++  ++ EI++TF+++F   A   D +  ++  L  L  G  V    +  GP SG SMNPAR+  PA+ S  +T  W+Y++GP++G     ++Y
Sbjct:  166 HWHALVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVYTGLWIYFLGPVVGTLSGAWVY 257          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
NIP61_ARATH3.078e-1133.33Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]
AQPZ_GLOVI3.078e-1132.20Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
NIP21_MAIZE5.250e-1135.24Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
PIP16_MAIZE6.856e-1136.84Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
NIP32_ORYSJ6.856e-1136.11Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
NIP12_ORYSJ6.856e-1136.79Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP22_ORYSJ8.954e-1132.98Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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