CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.261e-38
Identity = 70/124 (56.45%), Postives = 94/124 (75.81%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSH 380
            LL ++T G + P H ++ G    +G+++EI++TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+ + D+  +WVYWVGPLIGGGLAG +Y   FI  S+
Sbjct:  118 LLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWVGPLIGGGLAGLVYGDVFIGGSY 241          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38
Identity = 77/135 (57.04%), Postives = 94/135 (69.63%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI-----VRSHVPIPYE 398
            LL  LTGG +TPVH LA GVG  QG+  E + TF+LL  + ATI+DP++ +  G GPLLTG +VGAN +AGG  +GASMNPARSFGPAL +G+W  HWVYWVGPL GG LA   YE  F+       +H P+P E
Sbjct:  122 LLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAGGPLAVVAYELLFMDVEDAGGAHQPLPQE 256          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 73/128 (57.03%), Postives = 94/128 (73.44%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIP 392
            LL ++T   S P   L+ GVG    ++ EI++TF L++TVYAT VDPKKG+I  + P+  GF+VGANIL GG F+GASMNPA SFGPA+VS  W++HWVYW GPLIGGG+AG +YE  FI  +H  +P
Sbjct:  120 LLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLP 246          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 73/128 (57.03%), Postives = 94/128 (73.44%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIP 392
            LL ++T   S P   L+ GVG    ++ EI++TF L++TVYAT VDPKKG+I  + P+  GF+VGANIL GG F+GASMNPA SFGPA+VS  W++HWVYW GPLIGGG+AG +YE  FI  +H  +P
Sbjct:  119 LLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLP 245          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.593e-38
Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LL ++T G + P H +A G+   +G++ EI++TF+L++TVYAT  DPKKGS+  + P+  GF+VGANILA GPFSG SMNPARSFGPA+ +G++  +WVYWVGPLIGGGLAG +Y   FI
Sbjct:  118 LLKFVTHGKAIPTHGVA-GISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFI 236          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.501e-37
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPY 395
            LL   TGG+  P   LASGVG +  ++ E ++TF L++  YAT++DPK+G +  + PL  GF++GAN+LAGGPF GA MNPAR FGPALV   W  HWVYW+GP +G GLAG +YE   I  +   +P+
Sbjct:  124 LLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAVPH 252          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.116e-36
Identity = 69/129 (53.49%), Postives = 93/129 (72.09%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI-VRSHVPIP 392
            LL   TGG +    +L++GVG +  +++EI++TF L++TVYAT VDPKKG +  + P+  GF+VGANILAGG F GASMNPA SFGPA+V+G W +HWVYW+GP +G  +A  IY+  FI  R H  +P
Sbjct:  120 LLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVGAAIAALIYDIIFIGQRPHDQLP 248          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.764e-36
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LL   T G+      LASGVG   G++ EIILTF L++ VY+T++DPK+GS+  + PL  G +VGANIL GGPFSGASMNPAR+FGPALV   W DHW+YWVGP IG  LA  IYE   I
Sbjct:  128 LLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIYEYMVI 247          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.764e-36
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI-VRSHVPIP 392
            LL   TGG+ T   +L+ GV  +  +++EI++TF L++TVYAT VDPKKG I  + PL  G +VGANIL GG F GASMNPA SFGPA+VS  WT+HWVYWVGP IG  +A  +Y+  FI    H P+P
Sbjct:  120 LLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHEPLP 248          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI-VRSHVPIPYEEARF 410
            LL   TGG +    +L++GVG    ++ E+++TF L++TVYAT VDPKKG +  + P+  GF+VGANILAGG F GASMNPA SFGPA+V+G W +HWVYWVGPL G  +A  +Y+  FI  R H  +P   A +
Sbjct:  120 LLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWVGPLAGAAIAALVYDIIFIGQRPHQQLPTTAADY 254          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TIP22_MAIZE2.261e-3856.45Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP42_ORYSJ3.857e-3857.04Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR6.579e-3857.03Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA6.579e-3857.03Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP21_ORYSJ8.593e-3858.33Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE9.501e-3751.16Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP12_ORYSJ2.116e-3653.49Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH2.764e-3659.17Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP13_ARATH2.764e-3655.04Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_MAIZE6.158e-3651.85Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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