CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.050e-35
Identity = 71/126 (56.35%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVP 386
            LL   T GL      +ASGV    G++ EIILTF+L++ VY+T +DPK+GSI  + PL  G +VGANIL GGPF GASMNPAR+FGPALV   W++HW+YWVGP IGG LA  IYE   I   + P
Sbjct:  128 LLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWVGPFIGGALAALIYEYMIIPSVNEP 253          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.992e-35
Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LL   TGG+  P   LASGVG +  ++ E  +TF L++  YAT++DPK+G +  + PL  GF++GAN+LAGGPF GA MNPAR FGPALV   W  HWVYW+GP +G GLAG +YE   I
Sbjct:  125 LLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFVGAGLAGLLYEYLVI 244          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LL   TGG   P   LASGVG    ++ E ++TF  ++  YAT+VDPK+G +  + PL  GF++GAN+LAGGPF GA MNPAR FGPALV   W  HWVYW+GP +G GLAG +YE   I
Sbjct:  129 LLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLLI 248          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            LL   +GG+     TL   +     ++ E+++TF L++TVYAT VD + G  D + PL  G V GANILAGGPF GA+MNPAR+FGPALV  +W  HWVYW+GPLIG G+AG +YE
Sbjct:  127 LLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD-IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYE 241          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.919e-29
Identity = 55/116 (47.41%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            +L  +T  +      ++ GVG     I E+++TF L++TVY T +DPK+G++  + PL  G +VGANIL GGPF GA MNPA +FGP+LV   W  HW++WVGPL+G  LA  +YE
Sbjct:  120 VLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWVGPLLGAALAALVYE 235          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 1.573e-23
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = 3
Query:   15 SYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVR 374
            S + GGL   V  +A G+   QG++ E ++TF L+F V+  + D ++  + G  PL  G  + A  LA   ++GASMNPARSFGPA+V G++TD WVYWVGP++GG +AG +Y  FF VR
Sbjct:  123 SEVVGGLG--VTGIAPGLSTGQGVLIEALITFMLVFVVHG-VCDNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGNYTDLWVYWVGPIVGGIVAGAVYRLFFKVR 239          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.573e-23
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVR 374
            QG++ E ++TF L+F V+  + D ++  I G  PL  G  + A  L+   ++GASMNPARSFGPA+V G+WTD WVYWVGP++GG LAG +Y  FF VR
Sbjct:  143 QGVMIEALITFILVFVVHG-VCDNRRSDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGNWTDQWVYWVGPIVGGILAGAVYRLFFKVR 240          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVR 374
            Q ++ E ++TF L+F V A + DP +  I G  PL  G  + A  L     SGASMNPARSFGPA+V G WT HWVYWVGP+ GG LAG IY   F VR
Sbjct:  137 QAVLIEALITFILVFVVKA-VSDPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGVWTYHWVYWVGPIAGGLLAGIIYRLIFKVR 234          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 3
Query:   42 PVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEEAR 407
            P++ +A  +  F   + E +L F L++TV+ T  DP++G    +GP+  GFV GAN+LA GPFSG SMNPA +FG A+V G + +  VYWVGPL+GG  A  +Y+       +V +P E+ R
Sbjct:  133 PIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYD-------NVVVPVEDDR 246          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.061e-22
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   21 LTGGLS-TPVH-TLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFF 365
            + GGL  T VH  L +G     G++ E+I+TF L+FT++A+  D K+  + G   L  GF V    L    ++GASMNPARSFGPA++ G+W +HW+YWVGP+IG  LAG +YE  F
Sbjct:  141 VVGGLGVTTVHGNLTAG----HGLLVELIITFQLVFTIFASC-DSKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 252          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TIP32_ARATH1.050e-3556.35Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ORYSJ3.992e-3554.17Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP32_MAIZE1.517e-3454.17Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP32_ORYSJ3.866e-3053.45Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU1.919e-2947.41Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQP_ANOGA1.573e-2346.67Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP_AEDAE1.573e-2351.52Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
AQP_DROME2.272e-2253.54Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIP51_ARATH3.875e-2243.44Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQP4_RAT5.061e-2247.01Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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