CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   21 LTGGLS-TPVH-TLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFF 365
            + GGL  T VH  L +G     G++ E+I+TF L+FT++A+  D K+  + G   L  GF V    L    ++GASMNPARSFGPA++ G+W +HW+YWVGP+IG  LAG +YE  F
Sbjct:  144 VVGGLGVTTVHGNLTAG----HGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 255          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 3
Query:   21 LTGGLS-TPVH-TLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEEA 404
            + GGL  T VH  L +G     G++ E+I+TF L+FT++A+  D K+  + G   L  GF V    L    ++GASMNPARSFGPA++ G+W +HW+YWVGP+IG  LAG +YE  F     +   ++EA
Sbjct:  141 VVGGLGVTTVHGNLTAG----HGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPDVELKRRFKEA 265          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   21 LTGGLS-TPVH-TLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFF 365
            + GGL  T VH  L +G     G++ E+I+TF L+FT++A+  D K+  + G   L  GF V    L    ++GASMNPARSFGPA++ G+W +HW+YWVGP++G  LAG +YE  F
Sbjct:  141 VVGGLGVTTVHGNLTAG----HGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGAVLAGALYEYVF 252          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   21 LTGGLS-TPVH-TLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFF 365
            + GGL  T VH  L +G     G++ E+I+TF L+FT++A+  D K+  + G   L  GF V    L    ++GASMNPARSFGPA++ G+W +HW+YWVGP+IG  LAG +YE  F
Sbjct:  141 VVGGLGVTMVHGNLTAG----HGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 252          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 3
Query:   21 LTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEEA 404
            + GGL   V T+   +    G++ E+I+TF L+FT++A+  D K+  + G   L  G  V    L    ++GASMNPARSFGPA++ G+W +HW+YWVGP+IG  LAG +YE  F     +   ++EA
Sbjct:  141 VVGGLG--VTTVHGNLSAGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPDVELKRRFKEA 265          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   12 LSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVR 374
            +S    GL   V + +S +   Q ++ E ++TF +L  V   + DP +  I G  PL  G  + A  L     +GASMNPARSFGPA+V   W DHWVYWVGP++G  +A  +Y+  F VR
Sbjct:  121 VSEAVSGLDLGVSSFSSTLTVGQAVLIEALITF-ILVVVVKGVSDPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNMWIDHWVYWVGPIVGAIVAALLYKFVFKVR 240          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG--------LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIP 392
            +L Y++ G + P   +A  +  F   I E +LTF +++TV+    DP+ G   G        LG L+ G V GA +LA G  +GASMNPARSFGPA+VSG +++  VYW GP++G  +A  +++         P P
Sbjct:  117 VLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVA-GDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQALVFPTVPEPAP 251          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL   V   Q    EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++G++T+HWVYWVGP+IGGGL   +Y+
Sbjct:  118 LNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTNHWVYWVGPIIGGGLGSLLYD 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 3
Query:    9 LLSYLTGGL---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRS 377
            +LS +T  L   S  +++LA GV   QG+  EII T  L+  V AT  D ++  + G  PL  GF V    L    ++G  +NPARSFG A+++ ++ DHWV+WVGP IGG LA  IY+     RS
Sbjct:  113 ILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHNFQDHWVFWVGPFIGGALAVLIYDFILAPRS 237          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL  GV   Q    EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IGGGLA  +Y+
Sbjct:  118 LNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLASLLYD 220          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
AQP4_NOTAL6.610e-2247.01Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_DIPME6.610e-2243.85Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_MOUSE1.127e-2146.15Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_HUMAN1.127e-2147.01Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN2.512e-2141.41Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP_HAEIX6.187e-2041.32Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP51_ORYSJ2.351e-1938.24Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
MIP_HUMAN5.791e-1841.35Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQP1_PIG5.791e-1842.06Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
MIP_RABIT7.563e-1842.31Lens fiber major intrinsic protein OS=Oryctolagus ... [more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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