CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL +GV   Q    EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IGGGL   +Y+
Sbjct:  118 LNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYD 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    3 GFLLSYLTGGLS--------TP--------VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            G+LL+ L G L+        TP        +  L   VG  QG + E++LT   +  V+A+  D   G   G   L  GF +    L G PF+GA MNPARSF PA+++ ++T+HWV+W GPL+G  LA  +YE
Sbjct:   88 GYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR-PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRNFTNHWVFWAGPLLGAALAALLYE 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 3
Query:   12 LSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIV-DPKKGSIDG--------LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            L+  + G   P   +A  +  F G + E +LTF L++TV+     +P+    DG        LG L  G   GA +LA G  +GASMNPARSFGPA+VSG + +  VYW GP++G  +A  +Y+
Sbjct:  121 LNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGAAVAALVYQ 244          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL  GV   Q    EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GASMNPARSF PA+++ ++T+HWVYWVGP+IGG L G +Y+
Sbjct:  118 LNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNHWVYWVGPIIGGALGGLVYD 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:    9 LLSYLTGGL---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            +LS +T GL   S  ++ L+ GV   QG+  EI++TF L+  V A + D ++  + G  PL  G  V    L    ++G  MNPARSFG A+++ ++T HW++WVGP+IGG  A  IY+
Sbjct:  115 ILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA-VTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVLTKNFTYHWIFWVGPMIGGAAAAIIYD 232          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    9 LLSYLTGGL---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRS 377
            +LS +T  L   S  ++ LA GV   QG+  EII T  L+  V AT  D ++  + G GPL  GF V    L    ++G  +NPARSFG ++++ ++ DHW++WVGP IG  LA  IY+     RS
Sbjct:  113 ILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL  GV   Q    EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IGGGL   +Y+
Sbjct:  118 LNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYD 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL  GV   Q  I EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IG GL   +Y+
Sbjct:  118 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYD 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL  GV   Q  I EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IG GL   +Y+
Sbjct:  118 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYD 220          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 356
            ++TL +GV   Q    EI LT   +  ++AT  + + G +  +  L  GF +    L G  ++GA MNPARSF PA+++ ++++HWVYWVGP+IGGGL   +Y+
Sbjct:  116 LNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYD 218          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MIP_CAVPO7.563e-1841.35Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CHICK9.877e-1838.81Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP51_MAIZE1.290e-1739.52Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
MIP_RANPI1.290e-1742.31Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQPA_RANES1.685e-1740.34Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP1_BOVIN1.685e-1740.48Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
MIP_CANFA2.200e-1741.35Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_SHEEP3.753e-1741.35Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN3.753e-1741.35Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_RAT4.902e-1740.38Lens fiber major intrinsic protein (Fragment) OS=R... [more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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