CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   54 LASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALV---SGDWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LA G     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARSFG A++   S  W DHW++WVGP IG  +A F Y QF +
Sbjct:  159 LADGYNTGTGLAAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAF-YHQFVL 268          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   93 EIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFI 350
            EIILT  L+  V    V+ K  ++  L P   GF V  +ILAGG  SGA MNPAR+FGPA+++G W  HW+YW+GPL+ G   G +
Sbjct:  161 EIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLL 244          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 3
Query:    9 LLSYLTGGL---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRS 377
            +LS +T  L   S   + LA GV   QG+  EII T  L+  V AT  D ++  + G  PL  G  V    L    ++G  +NPARSFG A+++ ++++HW++WVGP IGG LA  IY+     RS
Sbjct:  111 ILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGGALAVLIYDFILAPRS 235          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   93 EIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQF 362
            EI++T  L+  V    V+ K  ++  L P   GF V  +ILAGG  SGA MNPAR+FGPA+++G W  HW+YW+GPL+ G   G +   F
Sbjct:  163 EIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLLIRLF 250          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   48 HTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            ++LASG     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARS G A++      W DHW++WVGPL+G  +A F Y Q+ +
Sbjct:  164 NSLASGYSRGTGLGAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAF-YHQYIL 275          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            Q ++ EII TF L+F +     D +  +I  L  L  G  +  N+L  GP SGASMNPARS GPALVSG++T  WVY VGP++G     + Y
Sbjct:  161 QSLVIEIITTFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGEYTSIWVYVVGPVVGAVAGAWAY 250          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   48 HTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            ++LASG     G+  EI+ TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARS G A+V      W DHW++WVGPL+G  +A F Y Q+ +
Sbjct:  166 NSLASGYSRGAGLGAEIVGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAF-YHQYIL 277          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 3
Query:    9 LLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            +L  + GG   PV     G  + Q ++ E ++TF L+F + A   D +  ++  +  +  G  +  N+L  GP SGASMNPARS GPALV   +T  WVY +GP  G     + Y
Sbjct:  150 VLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAY 262          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            V+ L++     Q +  E+ LT  L+  ++A+  D ++G   G   L  GF V    L G  ++G SMNPARS  PA+V+G + DHWV+W+GPL+G  L   +Y
Sbjct:  118 VNALSNSTTAGQAVTVELFLTLQLVLCIFAS-TDERRGENPGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAILGSLLY 219          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            V+T++ G      +  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARSFGPA++  +   W D W+YWVGP +G  +A  IY Q+ +
Sbjct:  160 VNTVSDGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAA-IYHQYIL 272          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PIP23_ARATH3.177e-1644.64Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
AQP8_MOUSE5.420e-1648.84Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
AQP1_MOUSE5.420e-1639.68Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP8_RAT7.078e-1645.56Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
PIP21_MAIZE1.207e-1542.11Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
NIP11_MAIZE1.207e-1546.74Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
PIP22_MAIZE1.577e-1542.11Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
NIP14_ORYSJ2.060e-1536.52Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQP2_HUMAN2.060e-1538.83Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
PIP27_MAIZE2.690e-1540.87Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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