CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   48 HTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            +TLA+G     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARS G A++  +   W +HW++WVGP +G  +A F Y Q+ +
Sbjct:  164 NTLAAGYSKGTGLAAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAF-YHQYIL 275          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    9 LLSYLTGGL---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQFFIVRS 377
            +LS +T  L   S   + LA GV   QG+  EII T  L+  V AT  D ++  + G  PL  G  V    L    ++G  +NPARSFG A+++ ++++HW++WVGP IG  LA  IY+     RS
Sbjct:  111 ILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGSALAVLIYDFILAPRS 235          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.992e-15
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 3
Query:   54 LASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            LA G     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARSFG A++  +   W D W++WVGP+IG   A F Y QF +
Sbjct:  161 LADGYNKGTGLGAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAF-YHQFIL 270          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.992e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            Q +  E+ LT  L+  ++A+  D ++G   G   L  GF V    L G  ++G SMNPARS  PA+V+G + DHWV+W+GPL+G  +A  +Y
Sbjct:  129 QAVTVELFLTLQLVLCIFAS-TDERRGDNVGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGKFDDHWVFWIGPLVGAIVASLLY 219          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3
Query:   51 TLASGVGYFQGIIWEIILTFSLLFTVYATIV----DPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEQF 362
            TLA+GV   +G   E++ T  L+F V    V    DPK   I  + PL  G  V A +     F+G S+NPARSFGPA+ S  W  H++YW GP+ GG +AG  +  F
Sbjct:  145 TLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPK---ISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVFSDTWHRHYIYWFGPICGGIIAGLFWRIF 249          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            ++ + + V   Q +  E++LT  L+  V+A+  D ++ S  G    + G  V    L G  F+G SMNPARSFGPA++ G +T HWV+WVGPL+G  LA  IY
Sbjct:  132 INVVRNSVSTGQAVAVELLLTLQLVLCVFAS-TDSRQTS--GSPATMIGISVALGHLIGIHFTGCSMNPARSFGPAIIIGKFTVHWVFWVGPLMGALLASLIY 231          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   12 LSYLTGGLSTPVHTLASGV-----GYFQGIIW--EIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHV 383
            + ++   + TP +TL  G      GY +G     EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARSFG A++  +   W D W++WVGP + G LA   Y Q+ +  S +
Sbjct:  133 VGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFL-GALAAAAYHQYILRASAI 268          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 3
Query:   54 LASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFIVRSHVPIPYEEAR 407
            L+ G     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARSFG A++  +   W D W++WVGP +G  +A F ++  F++R+     Y   R
Sbjct:  160 LSDGYNVGVGVGAEIIGTFVLVYTVFSA-TDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQ--FVLRAGAMKAYGSVR 281          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 3
Query:   21 LTGGLST--PVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            L GG +   P +T   G+G       EII TF L++TV++   D K+ + D     L PL  GF V    LA  P +G  +NPARS G A++  D   W DHW++WVGP+IG  LA  IY Q  I
Sbjct:  162 LGGGANVVNPGYTKGDGLGA------EIIGTFVLVYTVFSA-TDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAA-IYHQIII 278          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   48 HTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            +T+A G      +  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARSFG A++  +   W DHW++WVGP + G LA   Y Q+ +
Sbjct:  150 NTVADGYSTGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFV-GALAAAAYHQYIL 261          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PIP21_ORYSJ2.690e-1540.35Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
AQP1_RAT2.690e-1538.89Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
PIP24_ARATH5.992e-1542.86Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
AQP2_BOVIN5.992e-1541.30Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQPB_DICDI7.826e-1541.67Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
AQP6_HUMAN7.826e-1541.75Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
PIP27_ARATH1.335e-1436.96Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP26_ARATH1.743e-1437.60Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP1_SOLLC1.743e-1441.60Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP28_ARATH2.277e-1440.35Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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