CX287241

Overview
NameCX287241
Unique NameCX287241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig232 contig Ccv1_Contig232:78..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   45 VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            V+ L +     Q +  E+ LT  L+  ++A+  D ++G   G   L  GF V    L G  F+G SMNPARS  PA+V+G + DHWV+W+GPL+G  +   +Y
Sbjct:  118 VNALHNNATAGQAVTVELFLTMQLVLCIFAS-TDERRGDNLGSPALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAIIGSLLY 219          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 3
Query:   54 LASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            L+ G     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARS G A++      W DHW++WVGPLIG  +A   Y Q+ +
Sbjct:  166 LSDGYSKGTGLAAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAA-AYHQYVL 275          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   21 LTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSG---DWTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            L GG +T  H    G     G+  EII TF L++TV++   D K+ + D     L PL  GF V    LA  P +G  +NPARS G A++      W DHW++WVGP IG  LA  +Y Q  I
Sbjct:  162 LGGGANTVAHGYTKG----SGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAA-LYHQIVI 278          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 3
Query:    3 GFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            G    +L+GG++ P  T+++   +F     E I+TF+LLF V A   D +  ++  L  +  G  V  NIL  GP +G SMNP R+ GPA+ +G++   W+Y + P +G      +Y
Sbjct:  180 GVFHPFLSGGVTVPDPTISTAQAFFT----EFIITFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVY 290          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 3
Query:   54 LASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            L++G     G+  EII TF L++TV++   DPK+ + D     L PL  GF V    LA  P +G  +NPARS G A++  +   W DHW++WVGP IG  +A   Y Q+ +
Sbjct:  161 LSAGYSKGTGLAAEIIGTFVLVYTVFSA-TDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAA-AYHQYVL 270          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   21 LTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEQFFI 368
            L GG +T  H    G     G+  EII TF L++TV++   D K+ + D     L PL  GF V    LA  P +G  +NPARS G A++      W DHW++WVGP IG  LA  +Y Q  I
Sbjct:  161 LGGGANTVAHGYTKG----SGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAA-LYHQLVI 277          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            + ++ EII++F L+F +     D +  ++  L  +  G  +  N+   GP SGASMNPARS GPALV G +   WVY VGP++G    GF+Y
Sbjct:  160 RALVAEIIISFLLMFVISGVATDNR--AVGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVY 249          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 3
Query:   54 LASGVGYFQGIIWEIILTFSLLFTVYATIV-DPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            LA G+   Q  + E++LT  L   V  T V +     ++ + P   G  +   +  G  FSG ++NP R  GP+++SG W+ HWVYW+GP++G  LA FIY
Sbjct:  149 LAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIY 249          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKK-GSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            Q ++ EII++F L+F +     D +  G + G+     G  +  N+   GP SGASMNPARS GPA+V G +   WVY VGP +G    GF+Y
Sbjct:  160 QALVAEIIISFLLMFVISGVATDSRATGELAGIA---VGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVY 249          
BLAST of CX287241 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   78 QGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 353
            Q +  E+ LT  L+  ++ +  D ++G   G   L  GF V    L G  ++G SMNPARS  PA+V+G + DHWV+W+GPL+G  +A  +Y
Sbjct:  129 QAVTVELFLTLQLVLCIFPS-TDKRRGKQLGHPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGKFDDHWVFWIGPLVGAIVASLLY 219          
The following BLAST results are available for this feature:
BLAST of CX287241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
AQP2_RAT2.277e-1438.83Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
PIP23_ORYSJ2.974e-1441.07Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH2.974e-1440.65Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
NIP31_ORYSJ2.974e-1434.19Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
PIP25_MAIZE3.884e-1440.18Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP13_ARATH3.884e-1440.65Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
NIP41_ARATH3.884e-1441.30Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
AQPA_DICDI3.884e-1437.62Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
NIP42_ARATH5.073e-1441.94Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
AQP2_SHEEP5.073e-1440.22Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01006D02SK Veg1 Citrus clementina cDNA clone C01006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287241 ID=CX287241; Name=CX287241; organism=Citrus clementina; type=EST; length=631bp
AGGGTTTTCTCCTCAGTTATCTCACTGGTGGATTGAGTACACCAGTCCAC
ACTCTGGCTAGCGGCGTAGGCTATTTTCAAGGGATCATATGGGAGATTAT
TCTGACATTCTCCTTGCTATTTACCGTCTATGCCACTATCGTGGACCCCA
AGAAGGGATCAATTGATGGGCTTGGCCCATTGCTTACTGGGTTTGTGGTG
GGGGCAAACATCTTGGCCGGTGGACCTTTCTCCGGGGCCTCAATGAACCC
GGCACGATCCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATT
GGGTTTACTGGGTTGGCCCTCTCATTGGAGGTGGGCTTGCTGGCTTCATT
TATGAACAGTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGA
AGCCAGATTTTAATTAACTAACCGAATCCAATGGCGTGATGGACCATGGT
GTTATCTGTGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGT
GTGTCTTATGTGTATGAATCCTGTAATATTACAAGCTGCTGTTTCTCTCT
TGGTGTACTTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTT
TTTTGGCTGCTGTCAAAAAAAAAAAAAAAAA
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