CX287245

Overview
NameCX287245
Unique NameCX287245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.246e-40
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  181 GEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.004e-40
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  184 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.004e-40
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  184 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.535e-40
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            G V DPLYPGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  184 GVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 8.535e-40
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  182 GEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.483e-39
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  154 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.483e-39
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  183 GEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.225e-39
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.232e-38
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  182 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.610e-38
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    6 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            GE  DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   67 GEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
The following BLAST results are available for this feature:
BLAST of CX287245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_LEMGI2.246e-4091.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH5.004e-4091.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.004e-4091.67Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_PETSP8.535e-4090.48Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_GOSHI8.535e-4090.48Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC2.483e-3989.29Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_WHEAT2.483e-3989.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC7.225e-3989.29Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC1.232e-3888.10Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_PINSY1.610e-3890.48Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionC01006D06SK Veg1 Citrus clementina cDNA clone C01006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287245 ID=CX287245; Name=CX287245; organism=Citrus clementina; type=EST; length=482bp
ACGAGGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCA
TTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGA
AATCAAGAATGGAAGGCTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTC
AGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTG
GCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCC
CGGAAAGTGAGCTTCTGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGG
ATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTTAATTTGAGTTGC
GATTATTTATAAAATGCTTCAATTTGATCTTGTTCAAAAAAAAAAAAAAA
AAAACCTCGTGCCGAATTCGGCACGAGGTTGACAAATATATGAACTCTGT
GGAAGAGCTTATCGAGTATGAACCATAATTGC
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