CX287245
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 3 Query: 24 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 215 LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++ Sbjct: 216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15 Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 3 Query: 24 LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 215 LYPGG F DPLGLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N A HL+DP++ Sbjct: 213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 27 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 218 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HL+DP +N Sbjct: 185 YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12 Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 15 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 209 TD YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12 Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 15 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 209 TD YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12 Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 27 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 218 YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N Sbjct: 184 YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243
BLAST of CX287245 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11 Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 3 Query: 24 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 191 +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F +QA TGKGP+ LA Sbjct: 217 IYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272 The following BLAST results are available for this feature:
BLAST of CX287245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287245 ID=CX287245; Name=CX287245; organism=Citrus clementina; type=EST; length=482bpback to top |