CX287251

Overview
NameCX287251
Unique NameCX287251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:  124 TDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPPG
Sbjct:  133 TDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:  124 TDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:  124 TDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  135 TDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
The following BLAST results are available for this feature:
BLAST of CX287251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RBS2B_ARATH1.034e-1275.00Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1B_ARATH1.034e-1275.00Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_RAPSA1.763e-1272.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA1.763e-1272.73Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA1.763e-1272.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ2.303e-1275.56Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_SOYBN2.303e-1271.11Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_ORYSJ2.303e-1275.56Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.303e-1275.56Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_PETHY3.008e-1271.11Ribulose bisphosphate carboxylase small chain SSU1... [more]

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Properties
Property NameValue
Genbank descriptionC01006E02SK Veg1 Citrus clementina cDNA clone C01006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287251 ID=CX287251; Name=CX287251; organism=Citrus clementina; type=EST; length=371bp
AGGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGG
AATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCC
CAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGT
GTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAA
TTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCC
CCGACTTTGGCTTTTTTTTTTTATATATATTTTAATAATTGAATCCTTTG
TTTTCAAAGGGGGGGCCCGGT
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