CX287251

Overview
NameCX287251
Unique NameCX287251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:444..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  128 TDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  135 TDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  135 TDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  133 TDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  135 TDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  136 TDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP G
Sbjct:  137 TDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  135 TDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:  128 TDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
The following BLAST results are available for this feature:
BLAST of CX287251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RBS3_FLAPR8.752e-1266.67Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_SOLLC8.752e-1273.33Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC8.752e-1273.33Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2_FLAPR8.752e-1266.67Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2A_SOLLC8.752e-1273.33Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS1_SOLLC8.752e-1273.33Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_AMAHP8.752e-1268.89Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC1.143e-1171.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO1.143e-1170.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR1.143e-1164.44Ribulose bisphosphate carboxylase small chain, chl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006E02SK Veg1 Citrus clementina cDNA clone C01006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287251 ID=CX287251; Name=CX287251; organism=Citrus clementina; type=EST; length=371bp
AGGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGG
AATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCC
CAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGT
GTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAA
TTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCC
CCGACTTTGGCTTTTTTTTTTTATATATATTTTAATAATTGAATCCTTTG
TTTTCAAAGGGGGGGCCCGGT
back to top