CX287251

Overview
NameCX287251
Unique NameCX287251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:444..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISFLA KPPG
Sbjct:  137 TDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  134 TDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  134 TDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  134 TDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  134 TDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  134 TDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  130 TDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QVL+E+   +KEYP++F+RIIGFDN RQVQCISF+A KP G
Sbjct:  137 TDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISF+A KP
Sbjct:  137 TDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 133
            TDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP
Sbjct:  135 TDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of CX287251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RBS_MANES1.493e-1171.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI1.493e-1174.42Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.493e-1174.42Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI1.493e-1174.42Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_LEMGI1.493e-1174.42Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS2_LEMGI1.493e-1174.42Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS1_LEMGI1.493e-1174.42Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_GOSHI2.546e-1166.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA3.326e-1165.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN3.326e-1172.09Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E02SK Veg1 Citrus clementina cDNA clone C01006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287251 ID=CX287251; Name=CX287251; organism=Citrus clementina; type=EST; length=371bp
AGGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGG
AATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCC
CAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGT
GTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAA
TTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCC
CCGACTTTGGCTTTTTTTTTTTATATATATTTTAATAATTGAATCCTTTG
TTTTCAAAGGGGGGGCCCGGT
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