CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.370e-43
Identity = 88/164 (53.66%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V E R+T AI+PQINAFL+GF   IP  LI +F++ ELELL+SG+P+ID++D   NTEY SGY    PVIQWFWEVV+  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L LPEYPSK+ L++RLL+A+H G+ G+
Sbjct:  743 LVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 906          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.790e-43
Identity = 88/164 (53.66%), Postives = 119/164 (72.56%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V E R+T AI+PQINAFL+GF   IP  LI +F++ ELELL+SG+P+ID+ D   NTEY SGY    PVIQWFWEVV+  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L LPEYPSK+ L++RLL+A+H G+ G+
Sbjct:  743 LVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 906          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.801e-43
Identity = 87/164 (53.05%), Postives = 118/164 (71.95%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V E R+T AI+PQIN FL+GF   IP  LI +F++ ELELL+SG+P+ID++D   NTEY SGY     VIQWFWEVVQ  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L LPEYPSK+ L++RLL+A+H G+ G+
Sbjct:  778 LVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTANLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 941          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.160e-42
Identity = 87/164 (53.05%), Postives = 118/164 (71.95%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V E R+T AI+PQIN FL+GF   IP  LI +F++ ELELL+SG+P+ID++D   NTEY SGY     VIQWFWEVVQ  ++E++  LLQFVTG+S+VP  GF+ + G SG Q F I     + + LP++ TC N L LPEYPSK+ L++RLL+A+H G+ G+
Sbjct:  746 LVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 909          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.515e-42
Identity = 84/164 (51.22%), Postives = 116/164 (70.73%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +V   R+   I  Q NAF EGF+ELIP ELI++F+++ELELLI G+ +ID++D + +T+Y  YS    +I+WFWE++  +S E K+RLLQF TGTS++P+ GF  LQG  G +KF I KA G  + LP AHTCFN+LDLP Y SK+ L+ +L +A+ E   GFG
Sbjct:  604 LVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHTDYRSYSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRKFTIEKA-GEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLSIAVEE-TIGFG 765          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae GN=RSP5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.086e-40
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   16 RLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            R+   ++ Q  AF++GF ELIP +L+++F+++ELELLI G+ +ID++D + +T+Y GY  +  VIQWFW+ V  +  E +ARLLQF TGTS++P+ GF  LQG  G ++F I KA G +  LP +HTCFN++DLP+Y     ++++L LA+ E   GFG
Sbjct:  651 RIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKA-GEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE-TIGFG 807          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NED4L_PONAB (E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.389e-40
Identity = 84/164 (51.22%), Postives = 116/164 (70.73%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V + R    ++ Q+NAFLEGFTEL+P +LI IF++ ELELL+ GL D+D++D R ++ Y +GY    PVIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F I + +GS + LP AHTCFN+LDLP Y + + L E+LL+A+ E  +GF
Sbjct:  794 LVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ-WGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQGF 955          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NED4L_MOUSE (E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 5.389e-40
Identity = 84/164 (51.22%), Postives = 116/164 (70.73%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V + R    ++ Q+NAFLEGFTEL+P +LI IF++ ELELL+ GL D+D++D R ++ Y +GY    PVIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F I + +GS + LP AHTCFN+LDLP Y + + L E+LL+A+ E  +GF
Sbjct:  839 LVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ-WGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQGF 1000          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NED4L_HUMAN (E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 5.389e-40
Identity = 84/164 (51.22%), Postives = 116/164 (70.73%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V + R    ++ Q+NAFLEGFTEL+P +LI IF++ ELELL+ GL D+D++D R ++ Y +GY    PVIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F I + +GS + LP AHTCFN+LDLP Y + + L E+LL+A+ E  +GF
Sbjct:  810 LVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ-WGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQGF 971          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.493e-39
Identity = 77/163 (47.24%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            + EH+L T+   Q NA   G  ELIP  ++ IFN+ EL+ L++G  DID+ D +  T+Y  Y+    ++ WFWE++  +S E KA+LLQF TGTS++PL GF  + G  G +KF I K  G I  LP AHTCFN+LD+P Y SK+ LE++L +AI E   GFG
Sbjct:  509 LTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDGPRKFTIEKV-GHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQE-TAGFG 669          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HACE1_MOUSE1.370e-4353.66E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]
HACE1_HUMAN1.790e-4353.66E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
HACE1_XENLA6.801e-4353.05E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
HACE1_XENTR1.160e-4253.05E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
PUB1_SCHPO1.515e-4251.22E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
RSP5_YEAST1.086e-4046.54E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces ... [more]
NED4L_PONAB5.389e-4051.22E3 ubiquitin-protein ligase NEDD4-like OS=Pongo ab... [more]
NED4L_MOUSE5.389e-4051.22E3 ubiquitin-protein ligase NEDD4-like OS=Mus musc... [more]
NED4L_HUMAN5.389e-4051.22E3 ubiquitin-protein ligase NEDD4-like OS=Homo sap... [more]
PUB2_SCHPO3.493e-3947.24E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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