CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NEDD4_HUMAN (E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.016e-38
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V + R    I+ Q+ AF EGF ELIP +LI IF++ ELELL+ GL D+D++D R +T+Y +GYSA   VIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F + + +G+ + LP AHTCFN+LDLP Y S + L ++L +AI E  +GF
Sbjct: 1154 LVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQ-WGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAI-ENTQGF 1315          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 5.044e-38
Identity = 80/154 (51.95%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   16 RLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            R+   +  Q  A L GF E++   L+S+F+ +ELEL+I+G  +IDL+D R NTEY  GY     VI+WFW  V+ F+ E + RLLQFVTGTS VP EGF+AL+G +G ++F I K +G I  LP AHTCFN+LDLP YPS   L E+LL A+ E
Sbjct: 1445 RVERGVVQQTEALLRGFYEVVDSRLVSVFDARELELVIAGTAEIDLNDWRNNTEYRGGYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEK-WGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEE 1597          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.603e-38
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V + R    I+ Q+ AF EGF ELIP +LI IF++ ELELL+ GL D+D++D R +T+Y +GYS    VI WFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F + + +G+ D LP AHTCFN+LDLP Y S   L ++L +AI E  +GF
Sbjct:  722 LVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYKNGYSLNHQVIHWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQ-WGTPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAI-ENTQGF 883          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 8.603e-38
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V + R    I+ Q+ AF EGF ELIP +LI IF++ ELELL+ GL D+D++D R +T+Y +GYS    VI WFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F + + +G+ D LP AHTCFN+LDLP Y S   L ++L +AI E  +GF
Sbjct:  722 LVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYKNGYSMNHQVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQ-WGTPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAI-ENTQGF 883          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.124e-37
Identity = 79/154 (51.30%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   16 RLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            R+   +  Q  A + GF E++   L+S+F+ +ELEL+I+G  +IDL+D R NTEY  GY     VI+WFW  V+ F+ E + RLLQFVTGTS VP EGF+AL+G +G ++F I K +G I  LP AHTCFN+LDLP YPS   L E+LL A+ E
Sbjct: 1447 RVERGVVQQTEALVRGFYEVVDSRLVSVFDARELELVIAGTAEIDLNDWRNNTEYRGGYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEK-WGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEE 1599          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.467e-37
Identity = 80/164 (48.78%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +V E R    ++ Q+++FL+GF  +IP  LI IF++ ELELL+ G+ +ID+ D R NT Y G Y     +IQWFW  V  FS E ++RLLQFVTGTS+VP+ GF  L G +G Q F I K +G+ ++ P AHTCFN+LDLP Y     L+++L+ AI EG++GF
Sbjct:  842 LVIEWRFVARVKEQMSSFLDGFGSIIPLNLIKIFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEK-WGTPNNFPRAHTCFNRLDLPPYEGYLQLKDKLIKAI-EGSQGF 1003          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: SMUF2_XENLA (E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.503e-37
Identity = 73/153 (47.71%), Postives = 104/153 (67.97%), Query Frame = 1
Query:   16 RLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            R    I  Q  A  +GF E+IP  L+  F++KELEL+I GL  ID+ D ++NT     +  S +++WFW+ V+ F +E +ARLLQFVTG+S+VPL+GF ALQG +G + F IH+   S ++LP AHTCFN++D+P Y + + L E+LL AI E
Sbjct:  592 RFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIICGLGKIDVSDWKSNTRLKHCTTDSNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDASTNNLPKAHTCFNRIDIPPYETYEKLYEKLLTAIEE 744          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.503e-37
Identity = 78/164 (47.56%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +VAE RL+  +  Q  AF EGF E++P + +  F+ KELE+L+ G+ +IDL+D + +  Y  Y+  S  I WFW+ V+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I K  G  + LP +HTCFN+LDLP Y S + L+E+LL AI E  EGFG
Sbjct:  701 MVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRHYTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKV-GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 862          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.503e-37
Identity = 78/164 (47.56%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +VAE RL+  +  Q  AF EGF E++P + +  F+ KELE+L+ G+ +IDL+D + +  Y  Y+  S  I WFW+ V+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I K  G  + LP +HTCFN+LDLP Y S + L+E+LL AI E  EGFG
Sbjct:  740 MVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRHYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKV-GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 901          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.512e-37
Identity = 77/164 (46.95%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            ++ + R T  +  Q  AFL+GF E+ P E +  F++KELEL++ G+ +ID+ D + N  Y  Y+ +S  IQWFW+VV+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I +  G    LP +HTCFN+LDLP Y S + L+E+LL AI E  EGFG
Sbjct:  707 LLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRHYTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAELIGSNGPQKFCIDRV-GKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEE-TEGFG 868          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
NEDD4_HUMAN1.016e-3850.61E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens ... [more]
HECW1_MOUSE5.044e-3851.95E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
NEDD4_RAT8.603e-3850.00E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
NEDD4_MOUSE8.603e-3850.00E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ... [more]
HECW1_HUMAN1.124e-3751.30E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
NEDD4_DROME1.467e-3748.78E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]
SMUF2_XENLA2.503e-3747.71E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laev... [more]
ITCH_MOUSE2.503e-3747.56E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
ITCH_HUMAN2.503e-3747.56E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]
WWP2_MOUSE9.512e-3746.95NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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