CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: SMUF1_MOUSE (E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 75/156 (48.08%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   16 RLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            R    I  Q  A  +GF ELIP  L+  F+ KELEL+I GL  IDL+D ++NT      A S +++WFW+ V+ F +E +ARLLQFVTG+++VPL+GF ALQG +G+   + F IH    + D+LP AHTCFN++D+P Y S + L E+LL A+ E
Sbjct:  569 RFMRGIEAQFLALQKGFNELIPQHLLKPFDQKELELIIGGLDKIDLNDWKSNTRLKHCVADSNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 724          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: SMUF1_HUMAN (E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 75/156 (48.08%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   16 RLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            R    I  Q  A  +GF ELIP  L+  F+ KELEL+I GL  IDL+D ++NT      A S +++WFW+ V+ F +E +ARLLQFVTG+++VPL+GF ALQG +G+   + F IH    + D+LP AHTCFN++D+P Y S + L E+LL A+ E
Sbjct:  595 RFMRGIEAQFLALQKGFNELIPQHLLKPFDQKELELIIGGLDKIDLNDWKSNTRLKHCVADSNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 750          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: SMUF1_DROME (E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 7.054e-32
Identity = 72/158 (45.57%), Postives = 102/158 (64.56%), Query Frame = 1
Query:   13 HRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIH-KAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHE 474
            +R    I  Q  A  +GF ELIP  L+  F+++ELEL+I G+  ID++D R NT     +  +  + WFW+VV+ +S E +ARLLQFVTG+S+VPL+GF ALQG +G+   + F IH  A     +LP AHTCFN++DLP Y + Q L ++L  A+ E
Sbjct:  897 YRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVNDWRNNTRLKHCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQGSTGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAVEE 1054          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 74/158 (46.84%), Postives = 102/158 (64.56%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPD-IDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAI 468
            +V+ HRL   IR Q + FL GF +LIP E I +FN+ EL++LISG  D +D+DD+R NT Y+G Y A   VI  FWEV++ FS E++ + L+FVTG S+ PL GF  L+     Q+     +  S+D LP++ TC N L LP Y SK+ LE +L+ AI
Sbjct:  863 LVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAI 1020          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.330e-30
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG--YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            ++A++RL + ++ ++  FL+G  EL+P  L++IF++ ELELL+ G  DI++ D +A+    G  +     V++WFW VV   ++E+ ARLLQF TG+S++P  GF+AL        FQI  A  +   LP+AHTCFNQL LP Y S + +   L LAI EG EGFG
Sbjct:  662 LLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDINVSDFKAHAVVVGGSWHFREKVMRWFWAVVSSLTQEELARLLQFTTGSSQLPPGGFAAL-----CPSFQIIAA-PTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFG 821          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 72/166 (43.37%), Postives = 105/166 (63.25%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG--YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            ++A++RL + ++ ++  FL+G  EL+P  L++IF++ ELELL+ G  DI + D +A+    G  +     V++WFW VV   ++E+ ARLLQF TG+S++P  GF+AL        FQI  A  +   LP+AHTCFNQL LP Y S + +   L LAI EG EGFG
Sbjct:  662 LLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAAL-----CPSFQIIAA-PTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFG 821          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.596e-26
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLP-DIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAI 468
            +VA++RL   IRP   AF +G   ++  E + +F+ +E+++LISG    + L+D+++ T YSG YSA  PVI+ FW VV+GF+ E+K +LL+FVT  S+ PL GF  L        F IH     ++ LP+A TC N L LPE+  +  L  +LL AI
Sbjct:  922 LVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAI 1074          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 74/175 (42.29%), Postives = 99/175 (56.57%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHK---------AYG--SIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +A+++L   I P  NAF  G T+LI    + +FN  E   L+SG   DID+DD+R NT+Y+G YS +S  I+ FWEV++GF   ++  LL+FVT  S+ PL GF  LQ       F IHK         A G   ++ LPSA TC+N L LP Y     + E+LL AI   N GF
Sbjct:  971 MADYKLNRQIVPFSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQ-----PTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKLLYAI-TSNAGF 1139          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLP-DIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAI 468
            +VA++RL   IR    AF +G   ++  E + +F+ +E+++LISG    I L+D+++ T YSG YSA  PVI+ FW VV+GF+ E+K +LL+FVT  S+ PL GF  L        F IH     ++ LP+A TC N L LPE+  +  L  +LL AI
Sbjct:  922 LVADYRLNRQIRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAI 1074          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 60/158 (37.97%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   19 LTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            L  +I  Q  AF  GF  +     + +   +E+E+L+ G PD+D+  ++ +T+Y GY+     I++FW+VV GF  + + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL LP Y SK+ L+++L++ I   +EGFG
Sbjct:  625 LNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGI-SNSEGFG 774          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
SMUF1_MOUSE3.614e-3648.08E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus... [more]
SMUF1_HUMAN3.614e-3648.08E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens... [more]
SMUF1_DROME7.054e-3245.57E3 ubiquitin-protein ligase Smurf1 OS=Drosophila m... [more]
UPL6_ARATH5.972e-3146.84E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
K0317_MOUSE1.330e-3043.37Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]
K0317_HUMAN1.737e-3043.37Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
UBE3C_MOUSE2.596e-2641.77Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]
UPL7_ARATH1.683e-2542.29E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
UBE3C_HUMAN1.683e-2541.77Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
HECD2_PONAB1.683e-2537.97Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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