CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 60/158 (37.97%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   19 LTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            L  +I  Q  AF  GF  +     + +   +E+E+L+ G PD+D+  ++ +T+Y GY+     I++FW+VV GF  + + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL LP Y SK+ L+++L++ I   +EGFG
Sbjct:  625 LNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGI-SNSEGFG 774          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPD-IDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEG 477
            V +++L       ++AF  G + +I    + +FN  EL++LISG  D IDLDD+++NTEY GY      I  FWEV+  F  E+K   L+FVT   + PL+GF AL       KF I  A      LP+A TC N L LP+Y +K  L E+LL AI+ G
Sbjct:  751 VTDYKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKAL-----DPKFGIRNAGTEKYRLPTASTCVNLLKLPDYRNKTILREKLLYAINSG 904          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.395e-25
Identity = 59/158 (37.34%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   19 LTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            L  +I  Q  AF  GF  +     + +   +E+E+L+ G P++D+  ++ +T+Y GY+     I++FW+VV GF  E + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL LP Y S++ L+++L++ I   +EGFG
Sbjct:  623 LNKSIYKQFAAFYCGFHSVCASNALMLLRPEEVEILVCGSPELDMHALQRSTQYDGYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNWLPVAHTCFNQLCLPPYKSRKDLKQKLIIGI-SNSEGFG 772          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.861e-24
Identity = 64/166 (38.55%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLP-DIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +V+ + L   +  Q  AF  GFT++I    +++F++ E+++L+ G P  ID+DD+R +T Y+G Y   SP I  FWEV++ F +EDK   ++FVT  ++ P+ GF AL        F I         LP+A TC N L LP Y +KQ L ++LL A+  G  GFG
Sbjct:  868 LVSNYYLNARLSRQCRAFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALM-----PSFCIRVNGEDETRLPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSG-VGFG 1027          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 1
Query:    7 AEHRLTTAIRPQINAFLEGFTELIPGE--LISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +++ L  ++  Q  AF  GF  ++  E  L  +F  +E+ELLI G  ++D   +   TEY G Y+  S +I+ FWE+V  F+ E K   LQF TGT + P+ G        G  K  I K     + LP++HTCFN L LPEY SK+ L+ERLL AI    +GFG
Sbjct:  718 SDYILNKSVEKQFKAFRRGF-HMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL-------GKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYA-KGFG 873          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 56/161 (34.78%), Postives = 90/161 (55.90%), Query Frame = 1
Query:   19 LTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPD--IDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            L  +I P   +F  GF  +I G    +F  +ELE L+ G  +  +D+  +R+ T Y G +   SPV+QWFWE++       + +LL FVTG+ +VP  G + +        F+I +     D LP +HTCFN++ L EY  K+ L  +L++A+ E ++G+G
Sbjct:  685 LNRSIAPGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTI-------PFRISRIRSGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEE-SQGYG 837          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.474e-21
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   46 NAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +AF  GF ++  G+++ +F   EL+ ++ G  + D  ++  NTEY G Y A  P I+ FWEV      E K + L F+TG+ ++P+ G  +L       K  I    G  ++LP +HTCFN LDLP+Y  K+ L  +L+ AI + NEGF
Sbjct:  914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAI-DHNEGF 1054          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.925e-21
Identity = 65/165 (39.39%), Postives = 89/165 (53.94%), Query Frame = 1
Query:    7 AEHRLTTAIRPQINAFLEGFTELIPGE--LISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            +++ L  ++  Q  AF  GF  ++  E  L  +F  +E+ELLI G  ++D   +   TEY G Y+  S VI+ FWE+V  F+ E K   L F TGT + P+ G        G  K  I K     + LP++HTCFN L LPEY SK+ L  RLL AI    +GFG
Sbjct:  728 SDYILNKSVEKQFKAFRRGF-HMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGL-------GKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYA-KGFG 883          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC2_HUMAN (Probable E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.284e-21
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   40 QINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQ-KFQIHKAYGSIDH-LPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471
            Q+ A  EG   ++P  L+S+F   ELE ++ G PDI L  +++   Y G   ++ +IQWFWEV++ FS  +++  L+FV G +++P      +    G     Q+   Y   DH LP ++TCF  L LP Y  KQ LEE+L  AIH
Sbjct: 4645 QVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGIEPSASLIQWFWEVMESFSNTERSLFLRFVWGRTRLP----RTIADFRGRDFVIQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIH 4786          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC2_MOUSE (Probable E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.289e-21
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   40 QINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQ-KFQIHKAYGSIDH-LPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471
            Q+ A  EG   ++P  L+S+F   ELE ++ G PDI L  +++   Y G   ++ ++QWFWEV++ FS  +++  L+FV G +++P      +    G     Q+   Y   DH LP ++TCF  L LP Y  KQ LEE+L  AIH
Sbjct: 4647 QVAAVREGMARVVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGIEPSASLVQWFWEVMESFSNTERSLFLRFVWGRTRLP----RTIADFRGRDFVIQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIH 4788          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HECD2_HUMAN1.683e-2537.97Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
HUL5_YEAST4.896e-2541.51Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
HECD2_MOUSE6.395e-2537.34Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
YFK7_SCHPO1.861e-2438.55Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
UBE3A_HUMAN1.021e-2240.00Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
HUL4_ASHGO1.021e-2234.78Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
HERC4_HUMAN1.474e-2137.58Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
UBE3A_MOUSE1.925e-2139.39Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
HERC2_HUMAN3.284e-2137.67Probable E3 ubiquitin-protein ligase HERC2 OS=Homo... [more]
HERC2_MOUSE4.289e-2136.99Probable E3 ubiquitin-protein ligase HERC2 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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