CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.602e-21
Identity = 59/171 (34.50%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELI--SIFNDKELE----LLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERL-LLAIHEGNEGFG 492
            ++ E R  T I  Q+  F  GFT+++   +   S F    LE    +L  G   I +DD +A+TEY+G+      I WFW++++  ++E++  +L F T    VP+EGF  L     S K  I++ Y + D LP +HTCF +L +P YP+   +E+RL L+A    +  FG
Sbjct:  706 LLIERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEYNGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGL-----SSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFG 871          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.317e-21
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   46 NAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +AF  GF ++  G+++ +F   EL+ ++ G  + D  ++  NTEY G Y A  P I+ FWEV      E K + L F+TG+ ++P+ G  +L       K  I    G   +LP +HTCFN LDLP+Y  K+ L  +L+ AI + NEGF
Sbjct:  914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 9.556e-21
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   46 NAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            +AF  GF ++  G+++ +F   EL+ ++ G  + D  ++  NTEY G Y A  P I+ FWEV      E K + L F+TG+ ++P+ G  +L       K  I    G   +LP +HTCFN LDLP+Y  K+ L  +L+ AI + NEGF
Sbjct:  914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 62/166 (37.35%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   10 EHRLTTAIRPQINAFLEGFTELIPG-ELISIFNDKELELLISGLPD---IDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492
            E  L  +I PQ N F+ GF  +      I +FN +ELE L+ G  +    D   +R+ T+Y  G+S  S  + WFWE+++ +    + +LLQFVT + ++P  G S +       K  +  ++ S D LP AHTCFN++ L  Y SK+ LE +LL AI+E +EG+G
Sbjct:  732 EFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI-----PFKISLLGSHDS-DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINE-SEGYG 890          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   10 EHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471
            E+RL    R Q+ A  EG + ++P  L+S+   K+LE ++ G+P+I ++ ++    Y        ++QWFW  ++ FS E++   ++FV+G S++P            SQ+FQI K     D LP++ TCF QL LP Y S+  + ERL  AI+
Sbjct: 4689 EYRLHEMDR-QVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVRYREVDEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADI------SQRFQIMKVDRPYDSLPTSQTCFFQLRLPPYSSQLVMAERLRYAIN 4835          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 67/185 (36.22%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            ++A  R+ T I+ Q  AF+ GF  +I  E I +F+  EL+ LISG   +IDLDD++ +T  Y G+  +  VI W W+++   FS E+KA  L+FVT  S+ PL GF+      +++ +  S         GS+               LP++ TCFN L LP Y  K  L E+L  AI   N GF
Sbjct:  886 LMAHFRMHTQIKNQTVAFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHTVYYGGFHGSHRVIIWLWDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKKEPGGRLPTSSTCFNLLKLPNYSKKGILREKLRYAI-SMNTGF 1069          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   49 AFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            AF  GF ++  G+++ +F   EL  ++ G  + + +++     Y G YSA  P ++ FWE    F  E K + L F+TG+ ++P+ G ++LQ +       I       ++LP AHTC+N LDLP+Y SK+ L  RL  A+ +  EGF
Sbjct:  908 AFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIV-------IQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQAL-DNYEGF 1047          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   31 IRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDI-DLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDH---LPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            I+ Q+ AF  GF ++   E + IFN++ELE ++ G  D+  ++++  + ++  GY+++SP +++  +++  F +E +   LQFVTG+ ++P  G ++L     S K  I + +GS      LPS  TC N L LP Y SK+ ++E+L+ AI EG   F
Sbjct: 1347 IQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASL-----SPKLTIVRKHGSDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSF 1499          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 63/185 (34.05%), Postives = 96/185 (51.89%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            ++A  R+ T I+ Q  A + GF  +I  E I +F+  EL+ LISG   +IDL+D++ +T  Y G+  +  VI W W+++   F+ E++A  L+FVT  S+ PL GF+      +++ +  S         GS+               LP++ TCFN L LP Y  K  L E+L  AI   N GF
Sbjct:  884 LMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAI-SMNTGF 1067          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 1
Query:    1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            ++A  R+ T I+ Q  A + GF  +I  E I +F+  EL+ LISG   +IDL+D++ +T  Y G+  +  VI W W+++   F+ +++A  L+FVT  S+ PL GF+      +++ +  S         GS+               LP++ TCFN L LP Y  K  L E+L  AI   N GF
Sbjct:  882 LMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAI-SMNTGF 1065          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
UPL5_ARATH5.602e-2134.50E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
HERC4_RAT7.317e-2137.58Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]
HERC4_MOUSE9.556e-2137.58Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]
HUL4_YEAST1.630e-2037.35Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
HERC1_HUMAN4.743e-2034.42Probable E3 ubiquitin-protein ligase HERC1 OS=Homo... [more]
UBE3B_XENTR1.380e-1936.22Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
HERC3_HUMAN1.802e-1934.46Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
UPL4_ARATH3.074e-1934.18E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
UBE3B_MOUSE3.399e-1834.05Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
UBE3B_HUMAN7.572e-1833.51Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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