CX287254
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.602e-21 Identity = 59/171 (34.50%), Postives = 93/171 (54.39%), Query Frame = 1 Query: 1 VVAEHRLTTAIRPQINAFLEGFTELIPGELI--SIFNDKELE----LLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERL-LLAIHEGNEGFG 492 ++ E R T I Q+ F GFT+++ + S F LE +L G I +DD +A+TEY+G+ I WFW++++ ++E++ +L F T VP+EGF L S K I++ Y + D LP +HTCF +L +P YP+ +E+RL L+A + FG Sbjct: 706 LLIERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEYNGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGL-----SSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFG 871
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 7.317e-21 Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1 Query: 46 NAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 +AF GF ++ G+++ +F EL+ ++ G + D ++ NTEY G Y A P I+ FWEV E K + L F+TG+ ++P+ G +L K I G +LP +HTCFN LDLP+Y K+ L +L+ AI + NEGF Sbjct: 914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 9.556e-21 Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1 Query: 46 NAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 +AF GF ++ G+++ +F EL+ ++ G + D ++ NTEY G Y A P I+ FWEV E K + L F+TG+ ++P+ G +L K I G +LP +HTCFN LDLP+Y K+ L +L+ AI + NEGF Sbjct: 914 DAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAI-DHNEGF 1054
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20 Identity = 62/166 (37.35%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 10 EHRLTTAIRPQINAFLEGFTELIPG-ELISIFNDKELELLISGLPD---IDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGFG 492 E L +I PQ N F+ GF + I +FN +ELE L+ G + D +R+ T+Y G+S S + WFWE+++ + + +LLQFVT + ++P G S + K + ++ S D LP AHTCFN++ L Y SK+ LE +LL AI+E +EG+G Sbjct: 732 EFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI-----PFKISLLGSHDS-DDLPLAHTCFNEICLWNYSSKKKLELKLLWAINE-SEGYG 890
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = 1 Query: 10 EHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471 E+RL R Q+ A EG + ++P L+S+ K+LE ++ G+P+I ++ ++ Y ++QWFW ++ FS E++ ++FV+G S++P SQ+FQI K D LP++ TCF QL LP Y S+ + ERL AI+ Sbjct: 4689 EYRLHEMDR-QVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVRYREVDEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADI------SQRFQIMKVDRPYDSLPTSQTCFFQLRLPPYSSQLVMAERLRYAIN 4835
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19 Identity = 67/185 (36.22%), Postives = 97/185 (52.43%), Query Frame = 1 Query: 1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 ++A R+ T I+ Q AF+ GF +I E I +F+ EL+ LISG +IDLDD++ +T Y G+ + VI W W+++ FS E+KA L+FVT S+ PL GF+ +++ + S GS+ LP++ TCFN L LP Y K L E+L AI N GF Sbjct: 886 LMAHFRMHTQIKNQTVAFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHTVYYGGFHGSHRVIIWLWDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKKEPGGRLPTSSTCFNLLKLPNYSKKGILREKLRYAI-SMNTGF 1069
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19 Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 1 Query: 49 AFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 AF GF ++ G+++ +F EL ++ G + + +++ Y G YSA P ++ FWE F E K + L F+TG+ ++P+ G ++LQ + I ++LP AHTC+N LDLP+Y SK+ L RL A+ + EGF Sbjct: 908 AFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIV-------IQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQAL-DNYEGF 1047
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19 Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = 1 Query: 31 IRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDI-DLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDH---LPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 I+ Q+ AF GF ++ E + IFN++ELE ++ G D+ ++++ + ++ GY+++SP +++ +++ F +E + LQFVTG+ ++P G ++L S K I + +GS LPS TC N L LP Y SK+ ++E+L+ AI EG F Sbjct: 1347 IQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASL-----SPKLTIVRKHGSDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSF 1499
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18 Identity = 63/185 (34.05%), Postives = 96/185 (51.89%), Query Frame = 1 Query: 1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 ++A R+ T I+ Q A + GF +I E I +F+ EL+ LISG +IDL+D++ +T Y G+ + VI W W+++ F+ E++A L+FVT S+ PL GF+ +++ + S GS+ LP++ TCFN L LP Y K L E+L AI N GF Sbjct: 884 LMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAI-SMNTGF 1067
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18 Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 1 Query: 1 VVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489 ++A R+ T I+ Q A + GF +I E I +F+ EL+ LISG +IDL+D++ +T Y G+ + VI W W+++ F+ +++A L+FVT S+ PL GF+ +++ + S GS+ LP++ TCFN L LP Y K L E+L AI N GF Sbjct: 882 LMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYSKKSVLREKLRYAI-SMNTGF 1065 The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bpback to top |