CX287254

Overview
NameCX287254
Unique NameCX287254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HERC2_DROME (Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 46/145 (31.72%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   40 QINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQ-KFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471
            Q+ A  +G +++IP  L+S+F+  EL+ ++ G PDI L  +++   Y G+  +S ++ WFWEV++ F+ ++++  L+FV G +++P      +    G     Q+ +       LP ++TCF  L +P Y  K  L E+L  AIH
Sbjct: 4734 QVKAVRDGMSKVIPVPLLSLFSAAELQAMVCGSPDIPLGLLKSVATYKGFDPSSALVTWFWEVMEEFTNQERSLFLRFVWGRTRLP----RTIADFRGRDFVLQVLEKNPPDHFLPESYTCFFLLKMPRYSCKAVLLEKLKYAIH 4874          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECD3_MOUSE (Probable E3 ubiquitin-protein ligase HECTD3 OS=Mus musculus GN=Hectd3 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 42/146 (28.77%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   34 RPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471
            + Q+ A   G  +++P  ++ +   +ELE  + G P++ +D +R  T +  +  +   +Q+FWE +  F+ ED++R L+FVTG S++P   +           +     Y + D LP + TC + L LP Y S +  EE+L  A +
Sbjct:  712 KEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFEDFEPSDTRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYI----------YPDKLGYETTDALPESSTCSSTLFLPHYASAKVCEEKLRYAAY 847          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: HECD3_HUMAN (Probable E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 42/146 (28.77%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   34 RPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIH 471
            + Q+ A   G  +++P  ++ +   +ELE  + G P++ +D +R  T +  +  +   +Q+FWE +  F+ ED++R L+FVTG S++P   +           +     Y + D LP + TC + L LP Y S +  EE+L  A +
Sbjct:  712 KEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFEDFEPSDSRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYI----------YPDKLGYETTDALPESSTCSSTLFLPHYASAKVCEEKLRYAAY 847          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   19 LTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYS----GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            L   +  Q ++F +GF  + P   +  F  +EL+ L+ G    D  D +   E      GY+  S  +++ +E++  F  E +   LQFVTG+ ++P+ GF +L       +          D LPS  TC N L LP+Y S + + E+LL+A  EG + F
Sbjct: 1830 LNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCG-SKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSF 1989          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTE---------LIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQI---HKAYG--SIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            V +  L   I  Q+ AF+EGF++         L P EL+ IF   E +  ++ L          N E+ GY+  S +I  F  ++  F K ++   LQF+TG+ K+P+ GF +L     + KF +   H   G  + ++LPS  TC N L LP+Y SK  +  RL  AI EG   F
Sbjct: 1317 VIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYT------NLNAEH-GYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSL-----NPKFTVVLKHAEDGLTADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAF 1480          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.746e-14
Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    4 VAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDD---MRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            V ++ +   ++ Q+ AF  GF+ + P   + +  + EL  L  G  D D      M++     GY+  SP IQ    ++   + +++   LQF+TG+ K+P+ GF+ L       +      Y   D+LPS  TC N L LPEY S + L  RL  AI EG   F
Sbjct: 1481 VIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLF-GTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNEPPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSF 1644          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: MUG30_SCHPO (Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces pombe GN=mug30 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.280e-14
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 1
Query:   10 EHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDI------------DLDDMRA-------------NTEYSGYSAAS--PVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGN 480
            ++ L T ++ Q +AF +GF ++  G  IS+F D E+  LI G  ++            D  D  A              ++Y  +S  S   +I WFW+++  +S + +   L FVTG+ ++P  G    Q        +I       D LP +HTCFN L + EY S++ L+++L  A+ E N
Sbjct:  626 DYLLNTTVKKQFSAFFDGFMKVCGGNAISLFQDNEISKLIRGSEEVIDWELLKNVCVYDFYDQNAISNSISESEPSMTASKYLCHSFVSKRKIILWFWDLISHYSLKMQKLFLIFVTGSDRIPATGAHNFQ-------LRISVLGPDSDQLPISHTCFNHLCIWEYSSREKLKKKLDTALLETN 802          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBR5_RAT (E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 48/168 (28.57%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    7 AEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSA--ASPVIQ---WFWEVVQGFSKEDKARLLQFVTGTSKVPL--EGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            AEHR+       ++A  +G  +++P   +     ++  LL++G  ++++  + + T ++  S   A  ++Q   WFW +V+  S  ++  L+ F T +  +P   EGF  +  I+               HLP+A+TC ++L +P Y SKQ L+++LLLAI   N GF
Sbjct:  760 AEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDD--------QHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 919          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBR5_MOUSE (E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 48/168 (28.57%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    7 AEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSA--ASPVIQ---WFWEVVQGFSKEDKARLLQFVTGTSKVPL--EGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            AEHR+       ++A  +G  +++P   +     ++  LL++G  ++++  + + T ++  S   A  ++Q   WFW +V+  S  ++  L+ F T +  +P   EGF  +  I+               HLP+A+TC ++L +P Y SKQ L+++LLLAI   N GF
Sbjct: 2632 AEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDD--------QHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 2791          
BLAST of CX287254 vs. ExPASy Swiss-Prot
Match: UBR5_HUMAN (E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 48/168 (28.57%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    7 AEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSA--ASPVIQ---WFWEVVQGFSKEDKARLLQFVTGTSKVPL--EGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEGNEGF 489
            AEHR+       ++A  +G  +++P   +     ++  LL++G  ++++  + + T ++  S   A  ++Q   WFW +V+  S  ++  L+ F T +  +P   EGF  +  I+               HLP+A+TC ++L +P Y SKQ L+++LLLAI   N GF
Sbjct: 2639 AEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDD--------QHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 2798          
The following BLAST results are available for this feature:
BLAST of CX287254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HERC2_DROME1.292e-1731.72Probable E3 ubiquitin-protein ligase HERC2 OS=Dros... [more]
HECD3_MOUSE2.062e-1528.77Probable E3 ubiquitin-protein ligase HECTD3 OS=Mus... [more]
HECD3_HUMAN2.062e-1528.77Probable E3 ubiquitin-protein ligase HECTD3 OS=Hom... [more]
TRIPC_HUMAN3.517e-1530.43Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
UFD4_YEAST4.594e-1533.52Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
YDE1_SCHPO1.746e-1431.52Probable ubiquitin fusion degradation protein C12B... [more]
MUG30_SCHPO2.280e-1428.80Probable E3 ubiquitin-protein ligase mug30 OS=Schi... [more]
UBR5_RAT2.977e-1428.57E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rat... [more]
UBR5_MOUSE2.977e-1428.57E3 ubiquitin-protein ligase UBR5 OS=Mus musculus G... [more]
UBR5_HUMAN2.977e-1428.57E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC01006E05SK Veg1 Citrus clementina cDNA clone C01006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287254 ID=CX287254; Name=CX287254; organism=Citrus clementina; type=EST; length=493bp
GTAGTTGCGGAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGC
TTTTCTGGAGGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCT
TCAATGACAAGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGAT
TTGGATGACATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATC
TCCTGTTATCCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGG
ATAAGGCTCGTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTG
GAAGGTTTCAGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAAT
ACACAAGGCATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTT
TCAATCAATTAGATTTGCCGGAATATCCTTCTAAGCAGCATCTAGAGGAG
AGACTGCTGCTTGCAATTCATGAAGGCAATGAAGGGTTTGGAT
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