CX287255

Overview
NameCX287255
Unique NameCX287255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14421 contig Ccv1_Contig14421:18..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA6_RAT (GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++LVG+TG+GKSATGNSILGR+ F+S+ S+  VT   +     L +G+ + VIDTP +       E   K+I  C  +A  G HAVL          +++EAA   LQ +FG  I  Y I+VF
Sbjct:  105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILSPQNQPEATAKKI--CDILASPGPHAVLLVIQVGRYTTEDQEAA-RCLQEIFGNGILAYTILVF 223          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA1_MOUSE (GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++LVGRTG GKSATGNSILG++ F SR  +  VT +C +   +   G  V V+DTP +F         G  E  +C  ++  G HA+L          Q+ + AL +++ LFGK++    +VVF
Sbjct:    6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWA-GWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQ-ALAAVKRLFGKQVMARTVVVF 127          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA8_MOUSE (GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++L+G+ G GKSATGN+ILG+  F+S+ S   VT  C+ +   ++  QV+ VIDTP LF   + SE   + + +C+ +  D  H VL          +E+   +  +    G K + +MIVVF
Sbjct:   51 LLLLGKQGAGKSATGNTILGKAVFESKFSDHMVTDRCQSESVSVRGKQVI-VIDTPDLFSSLSCSEVRQQNLKQCLELLADD-HCVLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVF 171          

HSP 2 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE----FVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP  F  + G+E     + +EI  C+ + ++G+  +           QE+E  +  L+  F + I  YMIV+F
Sbjct:  478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FIQTPGTEKDPSRLKEEIHHCLSLCEEGM-KIFVLVLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLF 601          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA5_MOUSE (GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++LVG++G GKSATGNSIL R AF+SR     VT T + + T   +G+ + V+DTP +F+  A ++ + K+I  C  +   G H VL           E+  A+  ++ +FG  +  +MIV+F
Sbjct:   29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAE-TGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPH-VLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMIVLF 149          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA1_HUMAN (GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  141 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            S     R ++LVGRTG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +F         G +E   C  ++  G HA+L          Q+++ A+  ++ +FG+ +  +M++VF
Sbjct:   22 SRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRAC-TTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLKWMVIVF 151          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA8_RAT (GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.294e-13
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++L+G+ G GKSATGN+ILG+  F+SR S   VT  C+ +   ++  QV+ VIDTP LF      E   + + +C+ +  D    VL          +E++  +  +Q +FG + + +MIVVF
Sbjct:   51 LLLLGKQGAGKSATGNTILGKAVFESRFSHHMVTKRCQSESVSVRGKQVI-VIDTPDLFSSLGCPEVQQQNLRQCLDLLADPY--VLLLVTPIGHSTEEDKKTIEGIQGVFGPQAYRHMIVVF 170          

HSP 2 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE----FVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS  +  R  L D Q + V+DTP L   S G+E     + KEI +C+    +    V           QE+EA +  L+  F + I  YMIV+F
Sbjct:  477 IILLGRSGVGKSATGNTILGRPAFVSQLRAQPVTSRSQSGRRTL-DWQDIVVVDTPSLNQMS-GTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASFEENIMKYMIVLF 601          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA5_RAT (GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  150 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            +G   ++LVG++G GKSATGNSIL R AF+SR     VT T + +     +G+   V+DTP +F+    ++ + K+I  C  M   G H VL           E+  A+  ++ +FG  +  YMIV+F
Sbjct:   42 SGLLRILLVGKSGCGKSATGNSILRRPAFESRLRGQSVTRTSQAEMGTW-EGRSFLVVDTPPIFESKIQNQDMDKDIGNCYLMCAPGPH-VLLLVTQLGRYTVEDAMAVRMVKQIFGVGVMRYMIVLF 167          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA3_MOUSE (GTPase IMAP family member 3 OS=Mus musculus GN=Gimap3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.074e-12
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++LVG++G GKSATGNS+L R AF+SR     VT T + + T   +G+ + V+DTP +F+  A ++ + K+I  C  +   G H VL           E+  A+  ++ +FG  +  +MIV+F
Sbjct:   25 ILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAE-TGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPH-VLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLF 145          
BLAST of CX287255 vs. ExPASy Swiss-Prot
Match: GIMA6_HUMAN (GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  165 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDYMIVVF 533
            ++L+G+TG+GKSATGNSILGR  F+S+ S+  VT T + +R+    G+ + VIDTP +       E V   I + I ++  G HAVL           E++  +  LQ +FG  +  + I+VF
Sbjct:   43 LILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQ-RRSREWAGKELEVIDTPNILSPQVSPE-VADAICQAIVLSAPGPHAVL-LVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVF 162          
The following BLAST results are available for this feature:
BLAST of CX287255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GIMA6_RAT2.555e-1441.46GTPase IMAP family member 6 OS=Rattus norvegicus G... [more]
GIMA1_MOUSE1.656e-1337.90GTPase IMAP family member 1 OS=Mus musculus GN=Gim... [more]
GIMA8_MOUSE4.819e-1334.96GTPase IMAP family member 8 OS=Mus musculus GN=Gim... [more]
GIMA5_MOUSE4.819e-1336.59GTPase IMAP family member 5 OS=Mus musculus GN=Gim... [more]
GIMA1_HUMAN4.819e-1335.61GTPase IMAP family member 1 OS=Homo sapiens GN=GIM... [more]
GIMA8_RAT6.294e-1334.96GTPase IMAP family member 8 OS=Rattus norvegicus G... [more]
GIMA5_RAT8.220e-1335.94GTPase IMAP family member 5 OS=Rattus norvegicus G... [more]
GIMA3_MOUSE1.074e-1235.77GTPase IMAP family member 3 OS=Mus musculus GN=Gim... [more]
GIMA6_HUMAN3.124e-1237.40GTPase IMAP family member 6 OS=Homo sapiens GN=GIM... [more]

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Properties
Property NameValue
Genbank descriptionC01006E06SK Veg1 Citrus clementina cDNA clone C01006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287255 ID=CX287255; Name=CX287255; organism=Citrus clementina; type=EST; length=586bp
AAAAAGTCAAGTCTCTTTCCCTTTCTCATCTCTTCATACCCAGGCCAACG
CAATCCCTTTTGCTCTCCTGTCTTCGCAAGTAAATTGGAACTTTTTATAT
GATGGGAGGAAGTGCGATTGATGATGATTGGGAGCTTACTTCTCCATCTA
ATGGGGAGCGCACTGTGGTTTTAGTTGGCCGTACTGGCAATGGCAAAAGT
GCGACGGGCAACAGTATTCTTGGAAGAAGAGCCTTCAAGTCAAGGGCTAG
TTCATCTGGTGTTACTAGTACCTGTGAAATGCAGAGAACCGTGCTCAAAG
ATGGCCAAGTTGTTAATGTCATTGATACCCCTGGACTTTTTGATTTTTCC
GCTGGCTCTGAGTTTGTTGGCAAGGAAATTGTCAAATGTATCGGTATGGC
CAAGGATGGGATCCATGCAGTCCTTGTAGTTTTCTCTGTTAGAAGCCGTT
TTTCTCAAGAGGAAGAAGCTGCACTACACAGTTTGCAGACCTTGTTCGGG
AAAAAAATTTTTGACTATATGATTGTTGTTTTCACTGGAGGGGATGAACT
TGAAGATAATGATGAAACGTTAGAAGATTATTTGGG
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