CX287256

Overview
NameCX287256
Unique NameCX287256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig30 contig Ccv1_Contig30:920..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.477e-30
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+ DAVA AN+LE S        YY+LS+LTRTADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct:  180 EGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.153e-30
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+  AVAT N+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKG +K+VE+ A+SFS+A
Sbjct:  172 EGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.637e-29
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+P+AV TANILE S        YY + VLTRTADGDEGGKH LITATV  GKLYICKAQAGDKRWFKG +K+VES ASSFS A
Sbjct:  179 EGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.033e-28
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGFD   VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKG +K+VES  SSFSVA
Sbjct:  181 EGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.340e-27
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 268
            EGGF+ DAVATAN+LE+S        YY ++VLTRTADGDEGGKHQLITATV  GKLY+CKAQ  DKRWFKG +K+VE+ A SFSVA
Sbjct:  173 EGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258          
BLAST of CX287256 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   20 EGGFDPDAVATANILEASVRPP-----YYFLSVLTRTADGDEGGKHQLITATV-KGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 265
            EGGF P+ V+ A++L+ S         YY   +L R+ADGDEGG+HQLI ATV    KLYI K Q GDKRWFKG +K       SF+V
Sbjct:  157 EGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244          
The following BLAST results are available for this feature:
BLAST of CX287256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP3_TOBAC5.477e-3071.26Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_SOLLC7.153e-3073.56Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS4.637e-2973.56Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SPIOL1.033e-2871.26Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.340e-2770.11Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE3.447e-1651.14Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01006E07SK Veg1 Citrus clementina cDNA clone C01006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287256 ID=CX287256; Name=CX287256; organism=Citrus clementina; type=EST; length=369bp
CTCGTGCCGAATTCGGCACGAGGGTGGTTTCGACCCTGATGCTGTGGCAA
CAGCTAACATCTTGGAGGCTTCAGTCCGACCACCATACTACTTCTTGTCT
GTATTAACAAGAACTGCTGATGGAGATGAAGGTGGCAAGCATCAACTAAT
TACAGCCACGGTTAAAGGTGGCAAGCTTTACATCTGCAAGGCGCAAGCTG
GAGACAAGAGGTGGTTTAAGGGAACAAGAAAGTATGTGGAAAGCACTGCC
AGTTCTTTCAGTGTTGCTTGAGACATTAATCAGAATTTTTATGTAAATCC
AACTTAATGTATGCTGTTTGTTTTGAATTATCTACTCCCATCTTTCCCCA
AAAAAAAAAAAAAAAAAAA
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