CX287266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13 Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 3 Query: 234 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 530 ++ET SYLPPL+ E +L++I Y++ +GW LE H P YW MWK+P +G D +L E+ ++ YP VR++G+D Q Sbjct: 15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQ 101
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 3 Query: 375 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 S Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ Sbjct: 10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQ 63
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13 Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 3 Query: 234 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 K+ET SYLP + E + ++I+YLI GW P +E H P YW MWKLPM+G V+ E+ + +P VR++G+DN Q Q Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQ 100
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 M V LKK+ET SYLP ++ E + ++I++ I GW P +E EKG + YW MWKLP++G V+ E+ +E+P VR + +DN Q Q Sbjct: 1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQ 100
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11 Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 3 Query: 240 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 ET +LPP++ + + +I+Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G+D Q Q Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQ 103
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11 Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 3 Query: 240 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 ET +LPP++ + + +I+Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G+D Q Q Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQ 103
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11 Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 3 Query: 234 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 530 K+ET SYLPP++ E + +I Y I GW P +E K + +YW MWKLP +G + VL E+ + YP V+++ +DN Q Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQ 98 The following BLAST results are available for this feature:
BLAST of CX287266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287266 ID=CX287266; Name=CX287266; organism=Citrus clementina; type=EST; length=547bpback to top |