CX287266

Overview
NameCX287266
Unique NameCX287266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  234 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 530
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H  P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQ 101          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  375 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQ 63          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 3
Query:  234 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536
            K+ET SYLP +  E + ++I+YLI  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQ 100          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536
            M V     LKK+ET SYLP ++ E + ++I++ I  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQ 100          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 3
Query:  240 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536
            ET  +LPP++ + +  +I+Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQ 103          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 3
Query:  240 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536
            ET  +LPP++ + +  +I+Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQ 103          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 3
Query:  234 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 530
            K+ET SYLPP++ E +  +I Y I  GW P +E    K  +             +YW MWKLP +G  +   VL E+   +  YP   V+++ +DN  Q
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQ 98          
The following BLAST results are available for this feature:
BLAST of CX287266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_CHRVI3.170e-1335.35Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_ACECL5.406e-1355.56Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS1_THIFE5.406e-1336.63Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_NITVU7.061e-1335.14Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS_SYNPX2.271e-1133.33Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW2.271e-1133.33Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_HALNC3.874e-1134.34Ribulose bisphosphate carboxylase small chain OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC01006F05SK Veg1 Citrus clementina cDNA clone C01006F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287266 ID=CX287266; Name=CX287266; organism=Citrus clementina; type=EST; length=547bp
ATTCGGCACGAGGGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCG
GCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGT
CGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGA
AGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAA
TGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTC
ATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACC
TTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGA
TGGGTGTACCGTGAGCACCACAGGTCACCAGGATACTACGATGGACGCTA
CTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGG
TTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTC
CGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTT
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