CX287266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 7.457e-55 Identity = 96/154 (62.34%), Postives = 121/154 (78.57%), Query Frame = 3 Query: 84 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK++ YLIRS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GC TQV+ EV EV+KEYP + RIIGFDN RQVQ +S Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVS 160
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.406e-53 Identity = 97/164 (59.15%), Postives = 126/164 (76.83%), Query Frame = 3 Query: 66 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 A A A++V+ FTGLKS++ FP++ K +N SNGGRV+CM+VWPP G KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R+++RSPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCIS Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCIS 164
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 9.116e-53 Identity = 93/154 (60.39%), Postives = 122/154 (79.22%), Query Frame = 3 Query: 84 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 + A+ VAPF GLKS+++ P ++++ + ++ SNGGR++CM+VWP G KKFETLSYLPPLS + LLK++ YL+R+GWIPCLEF + G+VYRE+ SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+S Sbjct: 9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVS 160
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.008e-51 Identity = 99/181 (54.70%), Postives = 130/181 (71.82%), Query Frame = 3 Query: 27 MASSMIS----SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MASS+++ +A A A + +++V+ FTGLKS + FP++K +N SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R + SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCIS Sbjct: 1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCIS 180
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 1.719e-51 Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 3 Query: 168 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH++SP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCIS Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCIS 127
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.569e-47 Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3 Query: 84 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 + A+ APF GLKS+++ P +++ + + SNGGR++CM+VWP G KKFETLSYLPPL+ E LLK++ YL+R+ W+PCLEF E G+VYRE+ SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Q ++ Sbjct: 8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLT 158
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 2.658e-44 Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 M+VWPP GLKKFETLSYLPPL+ E LL E++YL+ GWIP LEFE++ G+VYREH +SPGYYDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCIS Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCIS 114
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.250e-42 Identity = 84/172 (48.84%), Postives = 112/172 (65.12%), Query Frame = 3 Query: 33 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCIS 545 +S+++SA V T AS A + + +++ + T +NG RV CM+VW P KFETLSYLPPLS +AL K+I Y+I+SGW PC+EF+++ G V RE PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC S Sbjct: 2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCAS 172
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.129e-41 Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3 Query: 249 SYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 +YLPPLS EALLK++ YLIRS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+S Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVS 98
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31 Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 3 Query: 12 GEQVPMASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 G +V A +++++ A + ++++ P +GL ++ A + + MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 73 GNRVSQAVPLMAASVGAESESRRWVASAILFPLSGLFAAVALKMAMMKPKVAAVLPFTSEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 254 HSP 2 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 398 HSP 3 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 685 HSP 4 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 828 HSP 5 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1116 HSP 6 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1260 HSP 7 Score: 130.954 bits (328), Expect = 3.727e-30 Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD YWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR+ FD+ +QVQ IS Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 541 HSP 8 Score: 128.642 bits (322), Expect = 1.850e-29 Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 MKVW P KKFET SYLPPLSD + K++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP +VR + FD+ +QVQ IS Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVIS 972 The following BLAST results are available for this feature:
BLAST of CX287266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287266 ID=CX287266; Name=CX287266; organism=Citrus clementina; type=EST; length=547bpback to top |