CX287266

Overview
NameCX287266
Unique NameCX287266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.457e-55
Identity = 96/154 (62.34%), Postives = 121/154 (78.57%), Query Frame = 3
Query:   84 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            + A+ VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK++ YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +S
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVS 160          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.406e-53
Identity = 97/164 (59.15%), Postives = 126/164 (76.83%), Query Frame = 3
Query:   66 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            A  A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R+++RSPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCIS
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCIS 164          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 9.116e-53
Identity = 93/154 (60.39%), Postives = 122/154 (79.22%), Query Frame = 3
Query:   84 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK++ YL+R+GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+S
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVS 160          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.008e-51
Identity = 99/181 (54.70%), Postives = 130/181 (71.82%), Query Frame = 3
Query:   27 MASSMIS----SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MASS+++    +A  A A  +    +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R +  SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCIS
Sbjct:    1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCIS 180          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.719e-51
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 3
Query:  168 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH++SP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCIS
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCIS 127          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.569e-47
Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3
Query:   84 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK++ YL+R+ W+PCLEF  E G+VYRE+  SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLT 158          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.658e-44
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            M+VWPP GLKKFETLSYLPPL+ E LL E++YL+  GWIP LEFE++ G+VYREH +SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCIS
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCIS 114          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.250e-42
Identity = 84/172 (48.84%), Postives = 112/172 (65.12%), Query Frame = 3
Query:   33 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCIS 545
            +S+++SA V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I Y+I+SGW PC+EF+++ G V RE    PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC S
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCAS 172          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.129e-41
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 3
Query:  249 SYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            +YLPPLS EALLK++ YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+S
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVS 98          
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31
Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 3
Query:   12 GEQVPMASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            G +V  A  +++++  A +       ++++ P +GL ++ A             +     +   MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct:   73 GNRVSQAVPLMAASVGAESESRRWVASAILFPLSGLFAAVALKMAMMKPKVAAVLPFTSEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 254          

HSP 2 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 398          

HSP 3 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 685          

HSP 4 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 828          

HSP 5 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1116          

HSP 6 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 1260          

HSP 7 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD  YWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ IS
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVIS 541          

HSP 8 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHH-----RSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+ +QVQ IS
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVIS 972          
The following BLAST results are available for this feature:
BLAST of CX287266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_AEGTA7.457e-5562.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH1.406e-5359.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE9.116e-5360.39Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.008e-5154.70Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA1.719e-5171.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY2.569e-4756.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL2.658e-4470.18Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA3.250e-4248.84Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT6.129e-4173.74Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_EUGGR4.402e-3138.04Ribulose bisphosphate carboxylase small chains, ch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006F05SK Veg1 Citrus clementina cDNA clone C01006F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287266 ID=CX287266; Name=CX287266; organism=Citrus clementina; type=EST; length=547bp
ATTCGGCACGAGGGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCG
GCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGT
CGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGA
AGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAA
TGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTC
ATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACC
TTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGA
TGGGTGTACCGTGAGCACCACAGGTCACCAGGATACTACGATGGACGCTA
CTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGG
TTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTC
CGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTT
back to top