CX287266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 5.749e-31 Identity = 75/176 (42.61%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 27 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEF-ELEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 +A S +S+A A S V P LK PA K + A+ M VW P K FET SYLPPLSDE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E+ K +P ++VR++ FDN++QVQ Sbjct: 5 IAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQ 162
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 3 Query: 207 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFE------LEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCI 542 KVW P K++ET SYLPPL+++ + +++ Y+I +GW PCLEF + R S GYYD RYWTMWKLPM+GCTD +QVL+EV Q +P+ ++R++ FDN +QVQC+ Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCM 147
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31 Identity = 74/176 (42.05%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 27 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEF-ELEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 +A S +S+A A S V P LK PA K + A+ M VW P K FET SYLPPL+DE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E+ K +P ++VR++ FDN++QVQ Sbjct: 5 IAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQ 162
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 9.179e-29 Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 3 Query: 336 ELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIS 545 ELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCIS Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCIS 70
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28 Identity = 63/142 (44.37%), Postives = 84/142 (59.15%), Query Frame = 3 Query: 135 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 FP K N ASN +C M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ Sbjct: 22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQ 160
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27 Identity = 62/147 (42.18%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 114 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 G SA P + A N R M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ Sbjct: 15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQ 159
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27 Identity = 64/161 (39.75%), Postives = 90/161 (55.90%), Query Frame = 3 Query: 75 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 A++ ++V G SS+ P S +A R M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ Sbjct: 3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQ 161
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27 Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 3 Query: 180 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFE-LEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 SNG + + M VW P K FET SYLPPL+D+ + K++ Y++R+ W PCLEF ++ +V ++ G Y D RYWTMWKLPM+GC D +QVL E+ K +P +++R++ FD RQVQ Sbjct: 26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQ 152
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ + G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQ 159
BLAST of CX287266 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 204 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 536 M VW P K FET S+LPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTDA+QVL E+ K +P +++R++ FD RQVQ Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQ 159 The following BLAST results are available for this feature:
BLAST of CX287266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287266 ID=CX287266; Name=CX287266; organism=Citrus clementina; type=EST; length=547bpback to top |