CX287267

Overview
NameCX287267
Unique NameCX287267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.389e-44
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = -3
Query:  258 ASAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 584
            AS +LA NAMA+EVLLG DDGSLAFVPS F+V+ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM    LLNG GETY VTLTE G+Y FYC+PHQGAGMVG++TV
Sbjct:   62 ASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.814e-44
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+VTL+EKGTYSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.814e-44
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVFDEDE+PSGVD +KISMS +DLLN PGETY+VTLTE GTY FYCSPHQGAGMVG+VTVN
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.814e-44
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLLN PGE Y V LTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.095e-44
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = -3
Query:  255 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 548
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN PGETYAVTLTEKGTYSFYC+PHQGAGMVG+VTVN
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.095e-44
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = -3
Query:  255 ASAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 584
            A A+LASNA+A+EVLLGG DGSLAFVPS+  V++GE +VFKNNAGFPHNV+FDEDE+P GVD   ISM  EDLLN PGET++VTL EKGTYS YCSPHQGAGM G++TVN
Sbjct:   57 AGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFPHNVLFDEDEVPKGVDAGAISMKEEDLLNAPGETFSVTLKEKGTYSIYCSPHQGAGMAGKITVN 166          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.279e-44
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN PGETYAVTLTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.176e-43
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM+ EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.620e-43
Identity = 80/99 (80.81%), Postives = 91/99 (91.92%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLL+ PG+ Y V LT+KG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.218e-42
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN  GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of CX287267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS1_ARATH1.389e-4479.82Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_SOLCR1.814e-4484.85Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_SAMNI1.814e-4482.83Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_CUCPE1.814e-4484.85Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_LACSA3.095e-4486.73Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_FRIAG3.095e-4474.55Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_MERPE5.279e-4484.85Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_SOLTU1.176e-4381.82Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_CUCSA2.620e-4380.81Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_CAPBU2.218e-4282.83Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]

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Properties
Property NameValue
Genbank descriptionC01006F06SK Veg1 Citrus clementina cDNA clone C01006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287267 ID=CX287267; Name=CX287267; organism=Citrus clementina; type=EST; length=586bp
AGGTGAGTGGGTATAGAGTAACTATTCTCATTACTAAAAGAAAGTCTAAT
GGGGCACCGATGTCTAAATTAGTTACATCACAAATCTGCATTTGAAATAA
ATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGTCTCACCACATAA
CATTCTCTCTCACCAAATGAAAATATGTATGATACTCATAAAATGCAAAA
AGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAGTCTGAATGTGAA
CTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCTTGGTGAGGGGAA
CAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAACAGCATAAGTCTC
TCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGATTTTTGAAACAT
CAACACCACTCGGAATCTCATCTTCATCGAAAACAACGTTGTGTGGGAAC
CCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCTGACAGAGAAAGA
GCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAAGCAAAACCTCAA
TGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAG
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