CX287267

Overview
NameCX287267
Unique NameCX287267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.453e-42
Identity = 82/99 (82.83%), Postives = 86/99 (86.87%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD  KISM  E+LLN PGETY VTL  KGTYSFYCSPHQGAGMVG+VTVN
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.438e-41
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAGFPHNVVFDEDEIPSGVD +KISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.314e-38
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = -3
Query:  255 ASAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 584
            ASAMLA  AMA EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   47 ASAMLAGGAMAQEVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.314e-38
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = -3
Query:  255 ASAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 584
            ASAMLA  AMA EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   47 ASAMLAGGAMAQEVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.066e-36
Identity = 69/99 (69.70%), Postives = 82/99 (82.83%), Query Frame = -3
Query:  255 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 551
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAGFPHNV+FDED +P+GVDVS ISMS EDLLN PGETY V L +KGTY F+C+PHQG GM G VTVN
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIFDEDAVPAGVDVSSISMSEEDLLNAPGETYVVKLDKKGTYRFFCAPHQGIGMSGIVTVN 99          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.626e-35
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = -3
Query:  255 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 548
            EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P+GV+  KIS    + LNG GETY VTLTEKGTY FYC PH GAGM G+VTVN
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEKISQ--PEYLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.430e-35
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = -3
Query:  258 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 548
            EV LG DDG+L F PSSFSV+ GE I FKNNAGFPHN+VFDEDE+P+GVDVSKIS   ED L+G GE++ VTLTEKGTY FYC PH GAGM G+VTV
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVFDEDEVPAGVDVSKISQ--EDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVTV 96          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.979e-35
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  255 MLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 575
            +L  +AMA +VLLG + G L F P+ FSV +GE I FKNNAG+PHNVVFDED +PSGVDVSKIS   E+ L  PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   51 LLGGSAMAQDVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSGVDVSKISQ--EEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 155          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.649e-29
Identity = 60/110 (54.55%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  255 ASAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 584
            +S +L ++A A  V +GGDDG+L F P   SV++GE + F NN GFPHNVVFDED +P+GV    I  + ED LNGP E++++T    GTY FYC PHQGAGM G VTV+
Sbjct:   61 SSLLLVASANAATVKMGGDDGALGFYPKDISVAAGESVTFVNNKGFPHNVVFDEDAVPAGVKTEDI--NHEDYLNGPNESFSITFKTPGTYEFYCEPHQGAGMKGVVTVS 168          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = -3
Query:  258 LASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 572
            LA++A A  V LG D G+L FVP + ++ SGE + F NNAGFPHN+VFDED IPSGV+   I  S +D LN PGETY+V LT  G Y +YC PHQGAGMVG++ V
Sbjct:   43 LAAHADAT-VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAI--SRDDYLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 144          
The following BLAST results are available for this feature:
BLAST of CX287267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS_PHAVU6.453e-4282.83Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]
PLAS_VICFA1.438e-4180.81Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_ORYSJ3.314e-3871.82Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI3.314e-3871.82Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_GINBI1.066e-3669.70Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_PETCR2.626e-3571.43Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_DAUCA3.430e-3573.20Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_HORVU9.979e-3566.36Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_PHYPA1.649e-2954.55Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]
PLAS_CHLRE1.823e-2859.05Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]

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Properties
Property NameValue
Genbank descriptionC01006F06SK Veg1 Citrus clementina cDNA clone C01006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287267 ID=CX287267; Name=CX287267; organism=Citrus clementina; type=EST; length=586bp
AGGTGAGTGGGTATAGAGTAACTATTCTCATTACTAAAAGAAAGTCTAAT
GGGGCACCGATGTCTAAATTAGTTACATCACAAATCTGCATTTGAAATAA
ATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGTCTCACCACATAA
CATTCTCTCTCACCAAATGAAAATATGTATGATACTCATAAAATGCAAAA
AGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAGTCTGAATGTGAA
CTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCTTGGTGAGGGGAA
CAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAACAGCATAAGTCTC
TCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGATTTTTGAAACAT
CAACACCACTCGGAATCTCATCTTCATCGAAAACAACGTTGTGTGGGAAC
CCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCTGACAGAGAAAGA
GCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAAGCAAAACCTCAA
TGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAG
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