CX287267

Overview
NameCX287267
Unique NameCX287267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ENTPR (Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.706e-26
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = -3
Query:  258 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 545
            V LGGDDGSLAFVP++ +V +GE I F NNAGFPHN+VFDED +P+GVD   I  S ED LN  G+T    LT  GTY  YC PH GAGM   +TV
Sbjct:    4 VKLGGDDGSLAFVPNNITVGAGESIEFINNAGFPHNIVFDEDAVPAGVDADAI--SAEDYLNSKGQTVVRKLTTPGTYGVYCDPHSGAGMKMTITV 97          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_CHLFU (Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = -3
Query:  258 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 551
            + V LG D G+L F PSS ++ +GE + + NNAGFPHN+VFDEDE+PSG +    ++S ED LN PGE+Y+      GTY ++C PHQGAGM G +TV
Sbjct:    2 VTVKLGADSGALVFEPSSVTIKAGETVTWVNNAGFPHNIVFDEDEVPSGANAE--ALSHEDYLNAPGESYSAKFDTAGTYGYFCEPHQGAGMKGTITV 97          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ULVPE (Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-26
Identity = 58/96 (60.42%), Postives = 66/96 (68.75%), Query Frame = -3
Query:  258 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 545
            V LGGDDGSLAFVPS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:    4 VKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ULVAR (Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = -3
Query:  258 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 545
            V LGGDDG+LAFVPS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:    4 VKLGGDDGALAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SCEOB (Plastocyanin, chloroplastic OS=Scenedesmus obliquus GN=PETE PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = -3
Query:  258 ASAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 584
            A   LA +A A  V LG D G+L F P++ ++ +G+ + + NNAGFPHN+VFDED +P+GV+    ++S +D LN PGE+Y       G Y ++C PHQGAGMVG+V V
Sbjct:   38 AGFSLALSANAANVKLGADSGALVFEPATVTIKAGDSVTWTNNAGFPHNIVFDEDAVPAGVNAD--ALSHDDYLNAPGESYTAKFDTAGEYGYFCEPHQGAGMVGKVIV 144          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_CYAP7 (Plastocyanin OS=Cyanothece sp. (strain PCC 7424) GN=petE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  258 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 545
            V +G D G L F P   ++ +G+ + + NN   PHN VFD  ++P  V  +KIS     L+  PGE++  T  E GTY++YC PH+GAGMVG +TV
Sbjct:   33 VKMGSDQGLLKFDPPQLTIKAGDTVKWVNNKLAPHNAVFDNSKVPDSVSATKISHKA--LVFSPGESFTTTFDEPGTYTYYCEPHRGAGMVGTITV 126          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SYNP6 (Plastocyanin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  258 SNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 566
            ++A  + + +G D+G LAF PS+  + +G+ + + NN   PHNVV +           +  +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   32 ASAQTVAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVE----------GQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SYNE7 (Plastocyanin OS=Synechococcus elongatus (strain PCC 7942) GN=petE PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  258 SNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 566
            ++A  + + +G D+G LAF PS+  + +G+ + + NN   PHNVV +           +  +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   32 ASAQTVAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVE----------GQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_PHOLA (Plastocyanin OS=Phormidium laminosum GN=petE PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  258 SAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTE---KGTYSFYCSPHQGAGMVGQVTV 581
            + M  + A    V +G D G L F P++ +V  G+ + + NN   PHN++FD+ ++P         +S   L+  PGE+Y +T +     GTY++YC+PH+GAGMVG++TV
Sbjct:   27 AVMSPAAAETFTVKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 137          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SYNY3 (Plastocyanin OS=Synechocystis sp. (strain PCC 6803) GN=petE PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = -3
Query:  258 SAMLASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKIS-MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 581
            S   A+NA    V +G D G+L F PS+ ++ +GE++ + NN   PHN+VF  D    GVD    + +S + L    GE++  T TE GTY++YC PH+GAGMVG+V V
Sbjct:   24 SPAAAANAT---VKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAAD----GVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVV 125          
The following BLAST results are available for this feature:
BLAST of CX287267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS_ENTPR1.706e-2660.42Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=... [more]
PLAS_CHLFU2.910e-2653.06Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1[more]
PLAS_ULVPE6.483e-2660.42Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1[more]
PLAS_ULVAR1.444e-2559.38Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1[more]
PLAS_SCEOB2.464e-2547.71Plastocyanin, chloroplastic OS=Scenedesmus obliquu... [more]
PLAS_CYAP71.710e-1843.75Plastocyanin OS=Cyanothece sp. (strain PCC 7424) G... [more]
PLAS_SYNP65.501e-1738.83Plastocyanin OS=Synechococcus sp. (strain ATCC 271... [more]
PLAS_SYNE75.501e-1738.83Plastocyanin OS=Synechococcus elongatus (strain PC... [more]
PLAS_PHOLA5.501e-1736.94Plastocyanin OS=Phormidium laminosum GN=petE PE=1 ... [more]
PLAS_SYNY37.185e-1743.12Plastocyanin OS=Synechocystis sp. (strain PCC 6803... [more]

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Properties
Property NameValue
Genbank descriptionC01006F06SK Veg1 Citrus clementina cDNA clone C01006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287267 ID=CX287267; Name=CX287267; organism=Citrus clementina; type=EST; length=586bp
AGGTGAGTGGGTATAGAGTAACTATTCTCATTACTAAAAGAAAGTCTAAT
GGGGCACCGATGTCTAAATTAGTTACATCACAAATCTGCATTTGAAATAA
ATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGTCTCACCACATAA
CATTCTCTCTCACCAAATGAAAATATGTATGATACTCATAAAATGCAAAA
AGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAGTCTGAATGTGAA
CTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCTTGGTGAGGGGAA
CAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAACAGCATAAGTCTC
TCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGATTTTTGAAACAT
CAACACCACTCGGAATCTCATCTTCATCGAAAACAACGTTGTGTGGGAAC
CCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCTGACAGAGAAAGA
GCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAAGCAAAACCTCAA
TGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAG
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