CX287267

Overview
NameCX287267
Unique NameCX287267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_PROHO (Plastocyanin OS=Prochlorothrix hollandica GN=petE PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = -3
Query:  258 SNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 566
            ++A  +++ +G D  +  + P + S+S+G+ + F  N   PHNV+FD+  +P+G   S  ++S   L   PG  Y+VTL   GTYSFYC+PH+GAGMVG +TV
Sbjct:   32 ASAATVQIKMGTDKYAPLYEPKALSISAGDTVEFVMNKVGPHNVIFDK--VPAGE--SAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCTPHRGAGMVGTITV 130          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ANAVT (Plastocyanin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petE PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -3
Query:  258 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 545
            V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G YSFYC PH+GAGMVG++TV
Sbjct:   39 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDATLNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGDYSFYCEPHRGAGMVGKITV 137          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ANASP (Plastocyanin OS=Anabaena sp. (strain PCC 7120) GN=petE PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  258 ASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 569
            +++A    V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G Y+FYC PH+GAGMVG++TV
Sbjct:   31 SASAETYTVKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 137          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ANASO (Plastocyanin OS=Anabaena sp. (strain PCC 7119) GN=petE PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  258 ASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 569
            +++A    V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G Y+FYC PH+GAGMVG++TV
Sbjct:   31 SASAETYTVKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 137          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_ANAVA (Plastocyanin OS=Anabaena variabilis GN=petE PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = -3
Query:  258 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 545
            V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G Y+FYC PH+GAGMVG++TV
Sbjct:    5 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 103          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_NOSP7 (Plastocyanin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  258 ASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 569
            +++A   +V LG D G LAF P   ++  G+ I + NN   PHNVVFD  + PS   D++K S+S + LL   G+    T       G Y+FYC PH+GAGMVG +TV
Sbjct:   31 SASAETYQVKLGTDKGLLAFEPKKLTIKPGDTIEWVNNKVPPHNVVFDPAKNPSKNADLAK-SLSHKKLLMSAGQKETTTFAADAPAGDYTFYCEPHRGAGMVGTITV 137          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_SYNJB (Plastocyanin OS=Synechococcus sp. GN=petE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  255 SNAMAIE---VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTE--KGTYSFYCSPHQGAGMVGQVTVN 566
            SN  A E   V +G D   L + P S +++ G+ + + NN  +PHNVVF  D++P G       +S + LL  P +       +   G Y++YC+PH+GAGMVG++ VN
Sbjct:   29 SNPAAAETYIVKMGSDKAQLVYDPPSLTINQGDTVQWVNNKVYPHNVVF--DKVPGGDAALAAKLSHKALLTAPKQVVESAFVDVPPGEYTYYCTPHRGAGMVGKIIVN 135          
BLAST of CX287267 vs. ExPASy Swiss-Prot
Match: PLAS_DRYCA (Plastocyanin OS=Dryopteris crassirhizoma GN=PETE PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = -3
Query:  258 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGV------DVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 548
            +V +G + G+  F P S +VS+GE + F       HN+VFD   IP+G       ++   SM   DLL+    ++   ++  GTY+FYC+PH+ A M G +TV
Sbjct:    2 KVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFD---IPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSANMKGTLTV 101          
The following BLAST results are available for this feature:
BLAST of CX287267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS_PROHO1.225e-1641.75Plastocyanin OS=Prochlorothrix hollandica GN=petE ... [more]
PLAS_ANAVT1.355e-1545.00Plastocyanin OS=Anabaena variabilis (strain ATCC 2... [more]
PLAS_ANASP1.770e-1541.67Plastocyanin OS=Anabaena sp. (strain PCC 7120) GN=... [more]
PLAS_ANASO1.770e-1541.67Plastocyanin OS=Anabaena sp. (strain PCC 7119) GN=... [more]
PLAS_ANAVA3.942e-1544.00Plastocyanin OS=Anabaena variabilis GN=petE PE=1 S... [more]
PLAS_NOSP71.147e-1442.59Plastocyanin OS=Nostoc punctiforme (strain ATCC 29... [more]
PLAS_SYNJB1.656e-1336.70Plastocyanin OS=Synechococcus sp. GN=petE PE=3 SV=... [more]
PLAS_DRYCA5.891e-1135.92Plastocyanin OS=Dryopteris crassirhizoma GN=PETE P... [more]

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Properties
Property NameValue
Genbank descriptionC01006F06SK Veg1 Citrus clementina cDNA clone C01006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287267 ID=CX287267; Name=CX287267; organism=Citrus clementina; type=EST; length=586bp
AGGTGAGTGGGTATAGAGTAACTATTCTCATTACTAAAAGAAAGTCTAAT
GGGGCACCGATGTCTAAATTAGTTACATCACAAATCTGCATTTGAAATAA
ATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGTCTCACCACATAA
CATTCTCTCTCACCAAATGAAAATATGTATGATACTCATAAAATGCAAAA
AGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAGTCTGAATGTGAA
CTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCTTGGTGAGGGGAA
CAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAACAGCATAAGTCTC
TCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGATTTTTGAAACAT
CAACACCACTCGGAATCTCATCTTCATCGAAAACAACGTTGTGTGGGAAC
CCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCTGACAGAGAAAGA
GCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAAGCAAAACCTCAA
TGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAG
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