CX287280

Overview
NameCX287280
Unique NameCX287280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.191e-42
Identity = 84/137 (61.31%), Postives = 107/137 (78.10%), Query Frame = 1
Query:  157 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            LP+ +DWRKKGAV  VK+QGSCGSCWAFST++ VE IN+I TG+LISLSEQELVDCD   N GC GG   +A+++II+NGGIDT+ +YPYKA+ G C   +  +KVV+ID Y  VP  +E AL++AVA QP +VAI+
Sbjct:    1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK-NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAID 133          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.881e-42
Identity = 92/192 (47.92%), Postives = 125/192 (65.10%), Query Frame = 1
Query:    4 ENRTYKVGLNRFADLTNEEYRSMYLGARFGAKR-TSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 576
            +N +Y +GLN FADL+N+E++  Y+G  F A+  T L+   ++ +  +     P S+DWR KGAV  VK+QG+CGSCWAFSTIA VEGINKIVTG+L+ LSEQELVDCD  ++ GC GG    + +++ +N G+ T   YPY+A    C    K    V I  Y+ VP N E +   A+ANQP+SV +E GG
Sbjct:   85 KNNSYWLGLNGFADLSNDEFKKKYVG--FVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD-KHSYGCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGG 272          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.326e-42
Identity = 88/191 (46.07%), Postives = 117/191 (61.26%), Query Frame = 1
Query:    4 ENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGG 576
            +N +Y +GLN FADL+N+E+   Y+G+   A   +++    + ++      LP++VDWRKKGAV  V+ QGSCGSCWAFS +A VEGINKI TG L+ LSEQELVDC+   + GC GG   YA E++  N GI     YPYKA  G+C   +    +V       V  N+E  L  A+A QPVSV +E  G
Sbjct:   85 KNNSYWLGLNEFADLSNDEFNEKYVGSLIDA---TIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKG 270          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.164e-41
Identity = 87/184 (47.28%), Postives = 119/184 (64.67%), Query Frame = 1
Query:   22 VGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEDDYPYK-AIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 567
            +GLN+ ADL+NEEYR  YLG R   K      +     L R     P +VDWR+K AV  VKDQG CGSC++FST  +VEG+  I TG L+SLSEQ ++DC +S+ NEGCNGGLM  AFE+II N G+++E+ YPY+  ++  C  +++ +    I  Y+++   DE  LQ A+   PVSVAI+
Sbjct:   76 LGLNQHADLSNEEYRLNYLGTRAHIKLNGYHKRNLGLRLNRPQFKQPLNVDWREKDAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDCSSSFGNEGCNGGLMTNAFEYIIKNNGLNSEEQYPYEMKVNDEC-KFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAID 258          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 87/187 (46.52%), Postives = 116/187 (62.03%), Query Frame = 1
Query:   13 TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIE 567
            +Y +G+N   D+T+EE  S+       + R   + +R+  Y     + LPDSVDWR+KG V EVK QGSCG+CWAFS + A+E   K+ TG L+SLS Q LVDC   Y N+GCNGG M  AF++IIDN GID+E  YPYKA D  C  Y    +  T   Y ++P   E  L++AVAN+ PV V ++
Sbjct:   72 SYDLGMNHLGDMTSEEVMSL-----MSSLRVPNQWQRNITYKSNPNQMLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSEKYGNKGCNGGFMTEAFQYIIDNKGIDSEASYPYKATDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVD 252          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 7.049e-41
Identity = 87/188 (46.28%), Postives = 117/188 (62.23%), Query Frame = 1
Query:   13 TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY--NEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIE 567
            +Y +G+N   D+T+EE  S+       + R   + +R+  Y       LPDSVDWR+KG V EVK QGSCG+CWAFS + A+E   K+ TG L+SLS Q LVDC T    N+GCNGG M  AF++IIDN GID++  YPYKA+D  C  Y    +  T   Y ++P   E  L++AVAN+ PVSV ++
Sbjct:   72 SYDLGMNHLGDMTSEEVMSL-----MSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 253          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41
Identity = 90/186 (48.39%), Postives = 119/186 (63.98%), Query Frame = 1
Query:   16 YKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 567
            + + +N F D+TNEE+R +  G R        K K+   +   +   +P SVDWR+KG V  VK+QG CGSCWAFS    +EG   + TG LISLSEQ LVDC  +  N+GCNGGLMD+AF++I +NGG+D+E+ YPY+A DGSC  YR    V     + D+P   EKAL KAVA   P+SVA++
Sbjct:   73 FSMEMNAFGDMTNEEFRQVVNGYRHQ------KHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSC-KYRAEFAVANDTGFVDIP-QQEKALMKAVATVGPISVAMD 250          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.498e-40
Identity = 89/186 (47.85%), Postives = 118/186 (63.44%), Query Frame = 1
Query:   16 YKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 567
            + + +N F D+TNEE+R +  G R        K K+   +   +   +P +VDWR+KG V  VK+QG CGSCWAFS    +EG   + TG LISLSEQ LVDC     N+GCNGGLMD+AF++I +NGG+D+E+ YPY+A DGSC  YR    V     + D+P   EKAL KAVA   P+SVA++
Sbjct:   73 FTMEMNAFGDMTNEEFRQIVNGYRHQ------KHKKGRLFQEPLMLQIPKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSC-KYRAEYAVANDTGFVDIP-QQEKALMKAVATVGPISVAMD 250          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.569e-40
Identity = 94/192 (48.96%), Postives = 118/192 (61.46%), Query Frame = 1
Query:   13 TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSD-RYLPRVGEALPDS--VDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGG 573
            TY + +N F+DLT+EE           A +T +  +R     LP+     P +  VDWR KGAV  VKDQG CGSCWAFS +AA+EG + + TG L+SLSEQ LVDC +SY N+GCNGG    A+++II N GIDTE  YPYKAID +C  Y       T+  Y +    DE ALQ AV N+ PVSV I+ G
Sbjct:   64 TYWLKINNFSDLTHEEVL---------ATKTGMTRRRHPLSVLPKSAPTTPMAADVDWRNKGAVTPVKDQGQCGSCWAFSAVAALEGAHFLKTGDLVSLSEQNLVDCSSSYGNQGCNGGWPYQAYQYIIANRGIDTESSYPYKAIDDNC-RYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAG 245          
BLAST of CX287280 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39
Identity = 88/189 (46.56%), Postives = 118/189 (62.43%), Query Frame = 1
Query:   13 TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGG 573
            ++ + +N F D+T+EE+R +  G +      + K ++   +   +    P SVDWR+KG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC     NEGCNGGLMDYAF+++ DNGG+D+E+ YPY+A + SC  Y     V     + D+P   EKAL KAVA   P+SVAI+ G
Sbjct:   72 SFTMAMNTFGDMTSEEFRQVMNGFQ------NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVADNGGLDSEESYPYEATEESC-KYNPEYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAG 252          
The following BLAST results are available for this feature:
BLAST of CX287280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ERVC_TABDI2.191e-4261.31Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
PAPA2_CARPA4.881e-4247.92Chymopapain OS=Carica papaya PE=1 SV=2[more]
PAPA3_CARPA8.326e-4246.07Caricain OS=Carica papaya PE=1 SV=2[more]
CYSP3_DICDI3.164e-4147.28Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATS_SAIBB5.397e-4146.52Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_HUMAN7.049e-4146.28Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATL1_MOUSE9.206e-4148.39Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATL1_RAT3.498e-4047.85Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CRUST_PANBO4.569e-4048.96Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATL1_CERAE1.018e-3946.56Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC01006G09SK Veg1 Citrus clementina cDNA clone C01006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287280 ID=CX287280; Name=CX287280; organism=Citrus clementina; type=EST; length=581bp
GCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATTTGAC
CAACGAGGAGTACCGGTCCATGTATCTGGGTGCACGCTTTGGTGCTAAAA
GGACTTCCTTGAAATCAAAGAGGAGCGATCGTTATCTGCCACGTGTCGGC
GAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGA
AGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACCATTG
CTGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTA
TCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAA
TGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTA
TTGACACAGAAGATGATTACCCCTACAAAGCCATTGATGGTAGCTGTGAC
ACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGT
TCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCG
TGAGTGTTGCGATTGAAGGAGGTGGCATGGC
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