CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAAB (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=carB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.262e-22
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 LNIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 1.262e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAA9 (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain JH9) GN=carB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.262e-22
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 LNIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 1.262e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAA8 (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain NCTC 8325) GN=carB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.262e-22
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 LNIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 1.262e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAA3 (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain USA300) GN=carB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.262e-22
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 LNIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 1.262e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAA2 (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain JH1) GN=carB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.262e-22
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 LNIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 1.262e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAA1 (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=carB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.262e-22
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 LNIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 1.262e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STRCO (Carbamoyl-phosphate synthase large chain OS=Streptomyces coelicolor GN=carB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.640e-22
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDA-YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKEV-------IPKHVSVKEAVLPFEKF-----QGWDVLLGPEMISTG 295
            + V GL+N Q+A+  +GD  Y+LEANPRASRTVPF SKA   PLAK AA +  G ++ +L   G    +       +   +SVKEAV+P+ +F     +G D +LGPEM STG
Sbjct:  823 VGVRGLINIQFAL--AGDILYVLEANPRASRTVPFTSKATAVPLAKAAARISLGATIAELRAEGLLPALGDGGTLPLDAPISVKEAVMPWSRFRDIHGRGVDTVLGPEMRSTG 933          

HSP 2 Score: 49.2914 bits (116), Expect = 1.640e-22
Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  A+AK+Q  A   LP  G  F+S+ +  K  +   A   +  GF +++TSGTA  ++  GI    V K
Sbjct:  934 EVMGIDSVFGTAYAKSQAGAYGPLPTKGRAFISVANRDKRSMIFPARELVAHGFELMATSGTAEVLKRNGINATVVRK 1011          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CLOAB (Carbamoyl-phosphate synthase large chain OS=Clostridium acetobutylicum GN=carB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.641e-22
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN QY +    + Y++E NPRASRTVP +SK  G P+ K A  +++GK+L +LG+  ++    K  +VK  V   EK    D+ LGPEM STG
Sbjct:  813 LEVKGLMNIQY-VYDGENVYVIEVNPRASRTVPILSKVTGVPMVKLAVEILTGKNLKELGYGVDLKKDNKLYAVKVPVFSNEKLANVDIYLGPEMRSTG 910          

HSP 2 Score: 48.1358 bits (113), Expect = 1.641e-22
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPL-SGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVE 516
            EVMGID  F +A  K   AAG ++P   G +++S+ D+ K     I + + + G+ I ++ GT  F++ +GI  E
Sbjct:  911 EVMGIDSDFEVAIYKGFRAAGIEVPKDGGNLYVSIKDVDKQESVPIIKKYTEFGYKIYASLGTGKFLQKQGIDCE 985          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACS1 (Carbamoyl-phosphate synthase large chain OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=carB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.135e-22
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH--VSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L   G+MN Q+ I  + +AY+LE NPRASRTVPF+SK  G  +A+ A  V+ G+SL + G+   +  +   V VK  V  F K    D  LGPEM STG
Sbjct:  811 LKCVGIMNIQFIIHNN-EAYVLEVNPRASRTVPFLSKITGIEMAQVATRVILGESLAEQGYQSGLYRESDMVHVKAPVFSFSKLADVDSFLGPEMKSTG 908          

HSP 2 Score: 51.9878 bits (123), Expect = 2.135e-22
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +F  A  KA   A  +LP +G V L++ D  K  +  +A+ F  IG+ + +T GT+ F+   G+ V+ V K+
Sbjct:  909 EVMGSDYTFEKALYKAFTGAKMELPDNGNVLLTIEDKDKDAVLPLAKRFSKIGYRMFATEGTSQFLRENGLFVQTVDKL 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_STAAW (Carbamoyl-phosphate synthase large chain OS=Staphylococcus aureus (strain MW2) GN=carB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.136e-22
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            +N+ GL+N Q+ I   G  Y+LE NPR+SRTVPF+SK    P+A+ A   + G+ L D+G+ + V P  + V VK  V  F K +  D+ LGPEM STG
Sbjct:  811 INIIGLINIQFVIAHDG-VYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAIIGEKLTDMGYQEGVQPYAEGVFVKAPVFSFNKLKNVDITLGPEMKSTG 908          

HSP 2 Score: 43.8986 bits (102), Expect = 2.136e-22
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K    +G ++   GTV ++++D  K  + ++A+   ++G+ I++TSGTA+ +    I  E V K+
Sbjct:  909 EVMGKDTTLEKALFKGLTGSGVEVKDHGTVLMTVSDKDKEEVVKLAQRLNEVGYKILATSGTANKLAEYDIPAEVVGKI 987          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_STAAB1.262e-2246.46Carbamoyl-phosphate synthase large chain OS=Staphy... [more]
CARB_STAA91.262e-2246.46Carbamoyl-phosphate synthase large chain OS=Staphy... [more]
CARB_STAA81.262e-2246.46Carbamoyl-phosphate synthase large chain OS=Staphy... [more]
CARB_STAA31.262e-2246.46Carbamoyl-phosphate synthase large chain OS=Staphy... [more]
CARB_STAA21.262e-2246.46Carbamoyl-phosphate synthase large chain OS=Staphy... [more]
CARB_STAA11.262e-2246.46Carbamoyl-phosphate synthase large chain OS=Staphy... [more]
CARB_STRCO1.640e-2246.02Carbamoyl-phosphate synthase large chain OS=Strept... [more]
CARB_CLOAB1.641e-2245.45Carbamoyl-phosphate synthase large chain OS=Clostr... [more]
CARB_LACS12.135e-2245.45Carbamoyl-phosphate synthase large chain OS=Lactob... [more]
CARB_STAAW2.136e-2245.45Carbamoyl-phosphate synthase large chain OS=Staphy... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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