CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RHIME (Carbamoyl-phosphate synthase large chain OS=Rhizobium meliloti GN=carB PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 4.958e-36 Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND--LGFTKEVIP---KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+AI G Y+LE NPRASRTVPFV+K IG P+AK AA VM+G+ L++ + K+ P KH++VKEAV PF +F G D LLGPEM STG Sbjct: 905 LNVGGLMNVQFAIK-DGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEMLDEAIAAYGKKPNPRNLKHIAVKEAVFPFARFPGVDTLLGPEMRSTG 1005 HSP 2 Score: 66.2402 bits (160), Expect = 4.958e-36 Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EV+G+D + +AFAK+Q+ AG LP GTVF+S+ D K + DIGF +++T GTA F+ +GI ++ K+ Sbjct: 1006 EVIGLDTDYALAFAKSQLGAGVDLPRDGTVFVSVRDEDKERVLPAIRILSDIGFKVMATGGTARFLGEQGIVATKINKV 1084
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METS3 (Carbamoyl-phosphate synthase large chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=carB PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 4.963e-36 Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L+V GLMN QYA+ + Y++EANPRASRTVPFVSKAIG PLAK A +M+G L D TKE+ HV+VKE+V PF K D +LGPEM STG Sbjct: 804 LDVKGLMNIQYAVKLDEEMVYIIEANPRASRTVPFVSKAIGVPLAKVATWIMTGAKLKDFNLTKEIKIDHVAVKESVFPFLKLPESDTVLGPEMKSTG 901 HSP 2 Score: 63.1586 bits (152), Expect = 4.963e-36 Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 E +G+D +F +AF K+Q+AAG LP G +F+S+ + K + IAE ++GF + +TSGTA KG+ +E++ K+ Sbjct: 902 ESIGVDENFGMAFYKSQLAAGMDLPKEGKIFISVKEQDKKKIRPIAEKAANLGFELAATSGTAD--AAKGVDIEKIKKV 978
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XYLFT (Carbamoyl-phosphate synthase large chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carB PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 8.418e-36 Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDA----YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+AI ++ D YLLE NPRASRTVPFVSKA G PLAK AA M+GK+L + T EV+P + +VKEA+ PF K QG D +LGPEM STG Sbjct: 821 LNVIGLMNTQFAIQSNDDGSDIVYLLEVNPRASRTVPFVSKATGVPLAKIAARCMTGKTLAEQSVTCEVVPAYYAVKEAIFPFAKLQGVDPILGPEMRSTG 921 HSP 2 Score: 55.8398 bits (133), Expect = 8.418e-36 Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF AFA+AQ A + P G F+S+ D K + + A ++ GF +V+T+GT +++ G+A E V K+ Sbjct: 922 EVMGVGRSFAAAFARAQEAGDIRAPQPGRAFVSVRDPDKKRVLPVVLALVERGFGVVATAGTYAWLQQNGVACEVVNKV 1000
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METBF (Carbamoyl-phosphate synthase large chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=carB PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.419e-36 Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q A G Y+LEANPR+SRT+PFVSK++G PLAK AA V++G SL LG+T E PKHVS+KE +LPF+K G D +LGPEM STG Sbjct: 814 LKVKGLINIQMA-EKCGKVYVLEANPRSSRTIPFVSKSVGIPLAKIAAKVIAGHSLKSLGYTDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 909 HSP 2 Score: 58.151 bits (139), Expect = 8.419e-36 Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F A+ KA++AA LPL+G VFLS+ + K L +A+ G ++ T GT +++ G+ ++ V K+ Sbjct: 910 EVMGIDYDFGRAYYKAELAADNVLPLTGKVFLSIRNADKTELVDVAKKLQAAGLELMGTEGTVNYLARHGVFMDVVKKV 988
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ZYMMO (Carbamoyl-phosphate synthase large chain OS=Zymomonas mobilis GN=carB PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.096e-35 Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+A+ GD YL+E NPRASRTVPFV+KA G P+A+ AA VM+G+ L +L E+ + +VKEAV P+ +F G D +L PEM STG Sbjct: 857 LKVQGLMNIQFAV--KGDKVYLIEVNPRASRTVPFVAKADGRPVAQVAARVMAGEKLRNL---PEISWPEGYTAVKEAVFPWARFPGVDPVLSPEMKSTG 951 HSP 2 Score: 83.9593 bits (206), Expect = 1.096e-35 Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID+ FP+AFAKAQ+AAG LP +GT F+S+ D K + +A D+G +V+T GTA +++ KG+ VERV K+ Sbjct: 952 EVMGIDIDFPMAFAKAQLAAGNALPRAGTFFISVKDSDKAQIVEPIKALTDLGIKLVATDGTARYLQSKGVPVERVNKV 1030
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XYLFA (Carbamoyl-phosphate synthase large chain OS=Xylella fastidiosa GN=carB PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.097e-35 Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDA----YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+AI ++ D YLLE NPRASRTVPFVSKA G PLAK AA M+GK+L + T EV+P + +VKEA+ PF K QG D +LGPEM STG Sbjct: 821 LNVIGLMNTQFAIQSNDDGSDIVYLLEVNPRASRTVPFVSKATGVPLAKIAARCMTGKTLVEQSVTCEVVPAYYAVKEAIFPFAKLQGVDPILGPEMRSTG 921 HSP 2 Score: 55.8398 bits (133), Expect = 1.097e-35 Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF AFA+AQ A + P G F+S+ D K + + A ++ GF +V+T+GT +++ G+A E V K+ Sbjct: 922 EVMGVGRSFAAAFARAQEAGDIRAPQPGRAFVSVRDPDKKRVLPVVLALVERGFGVVATAGTYAWLQQNGVACEVVNKV 1000
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METHJ (Carbamoyl-phosphate synthase large chain OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=carB PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.097e-35 Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q+A+ S Y+LEANPRASRTVPFV+K++G PLAK AA VM G+ L D+ + KE+ HV+VKE +LPF K G D +LGPEM STG Sbjct: 804 LGVVGLVNIQFAVQGS-TVYVLEANPRASRTVPFVAKSVGIPLAKIAARVMMGERLADMPY-KEIEVSHVAVKEVLLPFNKLPGVDTVLGPEMKSTG 898 HSP 2 Score: 65.855 bits (159), Expect = 1.097e-35 Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F A+ KA IAA +LP SG VF+S+ D K + ++A+ F + G +I +TSGT F +GI V K+ Sbjct: 899 EVMGIDYDFGRAYYKASIAAHNRLPKSGNVFISVTDDLKDQILQVAKTFTENGLSIYATSGTVEFFAERGITANLVRKI 977
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_AGRT5 (Carbamoyl-phosphate synthase large chain OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=carB PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 3.154e-35 Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND--LGFTKEVIP---KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN QYAI G Y+LE NPRASRTVPFV+K IG P+AK AA VM+G+ L+ + ++ P KH++VKEAV PF +F G D+LLGPEM STG Sbjct: 905 LKVGGLMNVQYAIK-DGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEKLDAAIAAYGEKPDPRNLKHIAVKEAVFPFARFPGVDILLGPEMRSTG 1005 HSP 2 Score: 65.855 bits (159), Expect = 3.154e-35 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EV+G+D F +AFAK+Q+ AG LP SGTVF+S+ D K + ++ GF +++T GT F+ +GI E++ K+ Sbjct: 1006 EVIGLDTDFALAFAKSQLGAGVDLPRSGTVFVSVRDEDKEGVLSAIRILVESGFKVLATGGTQRFLAEQGINAEKINKV 1084
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METTP (Carbamoyl-phosphate synthase large chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=carB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.156e-35 Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L+V G++N Q A G Y+LEANPR+SRT+PFVSKA+G PLAK AA VM+G +L ++ E +V+VKE +LPF+K G DVLLGPEM STG Sbjct: 815 LDVKGIINIQMAYK-DGIVYVLEANPRSSRTIPFVSKAVGLPLAKIAAKVMAGNTLREMNLNVEPEIPYVAVKEVLLPFDKLPGADVLLGPEMRSTG 910 HSP 2 Score: 66.6254 bits (161), Expect = 3.156e-35 Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID + ++F KA+++A LPL G VF+S+ D K + +A F++ G I++T GT+ ++ G+ ERV K+ Sbjct: 911 EVMGIDYNMGLSFFKAEMSAENNLPLDGIVFISVRDEDKAEIAEVARRFVNAGLKIIATDGTSGYLRGSGVPAERVRKI 989
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METBA (Carbamoyl-phosphate synthase large chain (Fragment) OS=Methanosarcina barkeri GN=carB PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.195e-35 Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q A G Y+LEANPR+SRT+PFVSKA+G PLAK AA V+ G SL LG+ E PKHVS+KE +LPF+K G D +LGPEM STG Sbjct: 137 LRVKGLINIQMA-EKGGKVYVLEANPRSSRTIPFVSKAVGIPLAKIAAKVIVGHSLKSLGYMDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 232 HSP 2 Score: 58.151 bits (139), Expect = 3.195e-35 Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F A+ KA++AA LPL+G VFLS+ + K L +A+ G ++ T GT +++ G+ ++ V K+ Sbjct: 233 EVMGIDYDFGRAYYKAELAADNVLPLTGKVFLSIRNADKTELVDVAKKLQAAGLELMGTEGTVNYLAQHGVFMDVVKKV 311 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |