CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_RHIME (Carbamoyl-phosphate synthase large chain OS=Rhizobium meliloti GN=carB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.958e-36
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND--LGFTKEVIP---KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+AI   G  Y+LE NPRASRTVPFV+K IG P+AK AA VM+G+ L++    + K+  P   KH++VKEAV PF +F G D LLGPEM STG
Sbjct:  905 LNVGGLMNVQFAIK-DGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEMLDEAIAAYGKKPNPRNLKHIAVKEAVFPFARFPGVDTLLGPEMRSTG 1005          

HSP 2 Score: 66.2402 bits (160), Expect = 4.958e-36
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EV+G+D  + +AFAK+Q+ AG  LP  GTVF+S+ D  K  +        DIGF +++T GTA F+  +GI   ++ K+
Sbjct: 1006 EVIGLDTDYALAFAKSQLGAGVDLPRDGTVFVSVRDEDKERVLPAIRILSDIGFKVMATGGTARFLGEQGIVATKINKV 1084          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METS3 (Carbamoyl-phosphate synthase large chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=carB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.963e-36
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L+V GLMN QYA+    +  Y++EANPRASRTVPFVSKAIG PLAK A  +M+G  L D   TKE+   HV+VKE+V PF K    D +LGPEM STG
Sbjct:  804 LDVKGLMNIQYAVKLDEEMVYIIEANPRASRTVPFVSKAIGVPLAKVATWIMTGAKLKDFNLTKEIKIDHVAVKESVFPFLKLPESDTVLGPEMKSTG 901          

HSP 2 Score: 63.1586 bits (152), Expect = 4.963e-36
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            E +G+D +F +AF K+Q+AAG  LP  G +F+S+ +  K  +  IAE   ++GF + +TSGTA     KG+ +E++ K+
Sbjct:  902 ESIGVDENFGMAFYKSQLAAGMDLPKEGKIFISVKEQDKKKIRPIAEKAANLGFELAATSGTAD--AAKGVDIEKIKKV 978          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XYLFT (Carbamoyl-phosphate synthase large chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.418e-36
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDA----YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+AI ++ D     YLLE NPRASRTVPFVSKA G PLAK AA  M+GK+L +   T EV+P + +VKEA+ PF K QG D +LGPEM STG
Sbjct:  821 LNVIGLMNTQFAIQSNDDGSDIVYLLEVNPRASRTVPFVSKATGVPLAKIAARCMTGKTLAEQSVTCEVVPAYYAVKEAIFPFAKLQGVDPILGPEMRSTG 921          

HSP 2 Score: 55.8398 bits (133), Expect = 8.418e-36
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  AFA+AQ A   + P  G  F+S+ D  K  +  +  A ++ GF +V+T+GT  +++  G+A E V K+
Sbjct:  922 EVMGVGRSFAAAFARAQEAGDIRAPQPGRAFVSVRDPDKKRVLPVVLALVERGFGVVATAGTYAWLQQNGVACEVVNKV 1000          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METBF (Carbamoyl-phosphate synthase large chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=carB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.419e-36
Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q A    G  Y+LEANPR+SRT+PFVSK++G PLAK AA V++G SL  LG+T E  PKHVS+KE +LPF+K  G D +LGPEM STG
Sbjct:  814 LKVKGLINIQMA-EKCGKVYVLEANPRSSRTIPFVSKSVGIPLAKIAAKVIAGHSLKSLGYTDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 909          

HSP 2 Score: 58.151 bits (139), Expect = 8.419e-36
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  A+ KA++AA   LPL+G VFLS+ +  K  L  +A+     G  ++ T GT +++   G+ ++ V K+
Sbjct:  910 EVMGIDYDFGRAYYKAELAADNVLPLTGKVFLSIRNADKTELVDVAKKLQAAGLELMGTEGTVNYLARHGVFMDVVKKV 988          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ZYMMO (Carbamoyl-phosphate synthase large chain OS=Zymomonas mobilis GN=carB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.096e-35
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+   GD  YL+E NPRASRTVPFV+KA G P+A+ AA VM+G+ L +L    E+     + +VKEAV P+ +F G D +L PEM STG
Sbjct:  857 LKVQGLMNIQFAV--KGDKVYLIEVNPRASRTVPFVAKADGRPVAQVAARVMAGEKLRNL---PEISWPEGYTAVKEAVFPWARFPGVDPVLSPEMKSTG 951          

HSP 2 Score: 83.9593 bits (206), Expect = 1.096e-35
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID+ FP+AFAKAQ+AAG  LP +GT F+S+ D  K  +    +A  D+G  +V+T GTA +++ KG+ VERV K+
Sbjct:  952 EVMGIDIDFPMAFAKAQLAAGNALPRAGTFFISVKDSDKAQIVEPIKALTDLGIKLVATDGTARYLQSKGVPVERVNKV 1030          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_XYLFA (Carbamoyl-phosphate synthase large chain OS=Xylella fastidiosa GN=carB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.097e-35
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDA----YLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+AI ++ D     YLLE NPRASRTVPFVSKA G PLAK AA  M+GK+L +   T EV+P + +VKEA+ PF K QG D +LGPEM STG
Sbjct:  821 LNVIGLMNTQFAIQSNDDGSDIVYLLEVNPRASRTVPFVSKATGVPLAKIAARCMTGKTLVEQSVTCEVVPAYYAVKEAIFPFAKLQGVDPILGPEMRSTG 921          

HSP 2 Score: 55.8398 bits (133), Expect = 1.097e-35
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  AFA+AQ A   + P  G  F+S+ D  K  +  +  A ++ GF +V+T+GT  +++  G+A E V K+
Sbjct:  922 EVMGVGRSFAAAFARAQEAGDIRAPQPGRAFVSVRDPDKKRVLPVVLALVERGFGVVATAGTYAWLQQNGVACEVVNKV 1000          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METHJ (Carbamoyl-phosphate synthase large chain OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=carB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.097e-35
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q+A+  S   Y+LEANPRASRTVPFV+K++G PLAK AA VM G+ L D+ + KE+   HV+VKE +LPF K  G D +LGPEM STG
Sbjct:  804 LGVVGLVNIQFAVQGS-TVYVLEANPRASRTVPFVAKSVGIPLAKIAARVMMGERLADMPY-KEIEVSHVAVKEVLLPFNKLPGVDTVLGPEMKSTG 898          

HSP 2 Score: 65.855 bits (159), Expect = 1.097e-35
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  A+ KA IAA  +LP SG VF+S+ D  K  + ++A+ F + G +I +TSGT  F   +GI    V K+
Sbjct:  899 EVMGIDYDFGRAYYKASIAAHNRLPKSGNVFISVTDDLKDQILQVAKTFTENGLSIYATSGTVEFFAERGITANLVRKI 977          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_AGRT5 (Carbamoyl-phosphate synthase large chain OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=carB PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.154e-35
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND--LGFTKEVIP---KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN QYAI   G  Y+LE NPRASRTVPFV+K IG P+AK AA VM+G+ L+     + ++  P   KH++VKEAV PF +F G D+LLGPEM STG
Sbjct:  905 LKVGGLMNVQYAIK-DGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEKLDAAIAAYGEKPDPRNLKHIAVKEAVFPFARFPGVDILLGPEMRSTG 1005          

HSP 2 Score: 65.855 bits (159), Expect = 3.154e-35
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EV+G+D  F +AFAK+Q+ AG  LP SGTVF+S+ D  K  +       ++ GF +++T GT  F+  +GI  E++ K+
Sbjct: 1006 EVIGLDTDFALAFAKSQLGAGVDLPRSGTVFVSVRDEDKEGVLSAIRILVESGFKVLATGGTQRFLAEQGINAEKINKV 1084          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METTP (Carbamoyl-phosphate synthase large chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=carB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.156e-35
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L+V G++N Q A    G  Y+LEANPR+SRT+PFVSKA+G PLAK AA VM+G +L ++    E    +V+VKE +LPF+K  G DVLLGPEM STG
Sbjct:  815 LDVKGIINIQMAYK-DGIVYVLEANPRSSRTIPFVSKAVGLPLAKIAAKVMAGNTLREMNLNVEPEIPYVAVKEVLLPFDKLPGADVLLGPEMRSTG 910          

HSP 2 Score: 66.6254 bits (161), Expect = 3.156e-35
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID +  ++F KA+++A   LPL G VF+S+ D  K  +  +A  F++ G  I++T GT+ ++   G+  ERV K+
Sbjct:  911 EVMGIDYNMGLSFFKAEMSAENNLPLDGIVFISVRDEDKAEIAEVARRFVNAGLKIIATDGTSGYLRGSGVPAERVRKI 989          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METBA (Carbamoyl-phosphate synthase large chain (Fragment) OS=Methanosarcina barkeri GN=carB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.195e-35
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q A    G  Y+LEANPR+SRT+PFVSKA+G PLAK AA V+ G SL  LG+  E  PKHVS+KE +LPF+K  G D +LGPEM STG
Sbjct:  137 LRVKGLINIQMA-EKGGKVYVLEANPRSSRTIPFVSKAVGIPLAKIAAKVIVGHSLKSLGYMDEPKPKHVSIKEVLLPFDKLPGADPVLGPEMKSTG 232          

HSP 2 Score: 58.151 bits (139), Expect = 3.195e-35
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  A+ KA++AA   LPL+G VFLS+ +  K  L  +A+     G  ++ T GT +++   G+ ++ V K+
Sbjct:  233 EVMGIDYDFGRAYYKAELAADNVLPLTGKVFLSIRNADKTELVDVAKKLQAAGLELMGTEGTVNYLAQHGVFMDVVKKV 311          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_RHIME4.958e-3658.82Carbamoyl-phosphate synthase large chain OS=Rhizob... [more]
CARB_METS34.963e-3659.18Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_XYLFT8.418e-3661.39Carbamoyl-phosphate synthase large chain OS=Xylell... [more]
CARB_METBF8.419e-3660.82Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_ZYMMO1.096e-3553.00Carbamoyl-phosphate synthase large chain OS=Zymomo... [more]
CARB_XYLFA1.097e-3561.39Carbamoyl-phosphate synthase large chain OS=Xylell... [more]
CARB_METHJ1.097e-3558.76Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_AGRT53.154e-3557.84Carbamoyl-phosphate synthase large chain OS=Agroba... [more]
CARB_METTP3.156e-3556.70Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_METBA3.195e-3560.82Carbamoyl-phosphate synthase large chain (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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