CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: PYR1_YEAST (Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 PE=1 SV=4)

HSP 1 Score: 51.9878 bits (123), Expect = 6.552e-11
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 2 
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP-KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L + G  N Q+ I    +  ++E N RASR+ PF+SK +G  L + A   + G  L    +  E +P  +V+VK     F +  G D +LG EM STG
Sbjct: 1240 LKITGPYNIQF-IAKDNEIKVIECNVRASRSFPFISKVVGVNLIELATKAIMGLPLTP--YPVEKLPDDYVAVKVPQFSFPRLAGADPVLGVEMASTG 1334

HSP 2 Score: 35.4242 bits (80), Expect = 6.552e-11
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 1 
Query:  328 AFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVE 516
            A+ K+ +A G KLP    +    +   K  L    +   ++G+ + +TSGTA F+   GIAV+
Sbjct: 1346 AYLKSLLATGFKLPKKNILLSIGSYKEKQELLSSVQKLYNMGYKLFATSGTADFLSEHGIAVQ 1408
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
PYR1_YEAST6.552e-1135.71Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 P... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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