CX287284 | Citrus Genome Database

Overview


Name	CX287284
Unique Name	CX287284
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	533

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BRUSU (Carbamoyl-phosphate synthase large chain OS=Brucella suis GN=carB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.076e-35
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----GFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L+V GLMN Q+AI   G+ ++LE NPRASRTVPFV+K +G P+AK AA +M+G+SL        G  +     H++VKEAV PF +F G D LLGPEM STG
Sbjct:  904 LHVGGLMNVQFAIK-DGEIFILEVNPRASRTVPFVAKTVGTPIAKVAARIMAGESLEAAFDAYGGKPQPTARPHIAVKEAVFPFARFPGVDTLLGPEMRSTG 1004

HSP 2 Score: 66.6254 bits (161), Expect = 9.076e-35
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+D  + +AFAKAQ+ AG +LP  GTVF+S+ D  K  +         IGF +++T GT  F+E  G+   ++ K+
Sbjct: 1005 EVMGLDYDYALAFAKAQLGAGVELPREGTVFVSVRDEDKERVLGPVRKLASIGFKVMATGGTQKFLEANGVESTKINKV 1083

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BRUME (Carbamoyl-phosphate synthase large chain OS=Brucella melitensis GN=carB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.076e-35
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----GFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L+V GLMN Q+AI   G+ ++LE NPRASRTVPFV+K +G P+AK AA +M+G+SL        G  +     H++VKEAV PF +F G D LLGPEM STG
Sbjct:  904 LHVGGLMNVQFAIK-DGEIFILEVNPRASRTVPFVAKTVGTPIAKVAARIMAGESLEAAFDAYGGKPQPTARPHIAVKEAVFPFARFPGVDTLLGPEMRSTG 1004

HSP 2 Score: 66.6254 bits (161), Expect = 9.076e-35
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+D  + +AFAKAQ+ AG +LP  GTVF+S+ D  K  +         IGF +++T GT  F+E  G+   ++ K+
Sbjct: 1005 EVMGLDYDYALAFAKAQLGAGVELPREGTVFVSVRDEDKERVLGPVRKLASIGFKVMATGGTQKFLEANGVESTKINKV 1083

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_VIBVY (Carbamoyl-phosphate synthase large chain OS=Vibrio vulnificus (strain YJ016) GN=carB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.084e-35
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+  + + YL+E NPRA+RTVPFVSKA G PLAK AA VM+G+SL   GFTKE+IP + SVKE VLPF KF G D LLGPEM STG
Sbjct:  819 LGVRGLMNTQFAVKDN-EVYLIEVNPRAARTVPFVSKATGAPLAKIAARVMAGQSLESQGFTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTG 914

HSP 2 Score: 45.8246 bits (107), Expect = 9.084e-35
Identity = 26/79 (32.91%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  A+AKA++  G   P  G   LS+ +  K  +  +A   L +G+ + +T GTA  +   GI    V K+
Sbjct:  915 EVMGVGATFAEAYAKAELGCGNVYPEGGRALLSVREGDKQRVVDLASKLLKLGYKLDATHGTAVILGEAGINPRLVNKV 993

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_VIBVU (Carbamoyl-phosphate synthase large chain OS=Vibrio vulnificus GN=carB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.084e-35
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+  + + YL+E NPRA+RTVPFVSKA G PLAK AA VM+G+SL   GFTKE+IP + SVKE VLPF KF G D LLGPEM STG
Sbjct:  819 LGVRGLMNTQFAVKDN-EVYLIEVNPRAARTVPFVSKATGAPLAKIAARVMAGQSLESQGFTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTG 914

HSP 2 Score: 45.8246 bits (107), Expect = 9.084e-35
Identity = 26/79 (32.91%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  A+AKA++  G   P  G   LS+ +  K  +  +A   L +G+ + +T GTA  +   GI    V K+
Sbjct:  915 EVMGVGATFAEAYAKAELGCGNVYPEGGRALLSVREGDKQRVVDLASKLLKLGYKLDATHGTAVILGEAGINPRLVNKV 993

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METB6 (Carbamoyl-phosphate synthase large chain OS=Methanoregula boonei (strain 6A8) GN=carB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.086e-35
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q A+  +   Y+LEANPRASRTVPFVSKA G P+AK AA VM GK L DLGF +  I +HV+VKE +LPF K  G D +LGPEM STG
Sbjct:  802 LGVVGLVNIQMAVKDNV-VYILEANPRASRTVPFVSKATGLPIAKIAAKVMIGKKLCDLGFHEAKI-RHVAVKEVLLPFNKLAGVDTILGPEMKSTG 896

HSP 2 Score: 61.2326 bits (147), Expect = 9.086e-35
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F +AF KA I+A  +LPL G VF+S+N   K  +  IA    D+G T+  T GT  ++   G+    V K+
Sbjct:  897 EVMGIDYDFGLAFYKACISADNELPLKGNVFVSVNIGQKDEVIPIARRLRDLGLTLYGTEGTVDYLHEAGVEAHLVRKV 975

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB2_METJA (Carbamoyl-phosphate synthase large chain, C-terminal section OS=Methanocaldococcus jannaschii GN=carB2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.144e-35
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL--GFTKEVI--------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ GL+N QYA+   G  Y+LEANPRASRTVP+VSK++G PLAK A  +M GK L +L   +  E +        PK+VS+KEAV PF+K  G D +LGPEM STG
Sbjct:  349 LNIVGLLNVQYAVK-DGVVYVLEANPRASRTVPYVSKSVGIPLAKLATKIMLGKKLEELIKDYDVEKVAEKVWIAKPKYVSIKEAVFPFQKLPGVDPVLGPEMKSTG 454

HSP 2 Score: 63.5438 bits (153), Expect = 9.144e-35
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            E +GID  F  A+ KAQ++A  +LP+ G VF+S+ D  K H+  +A+   ++GFTI +T GTA  +   GI    V K+
Sbjct:  455 EAIGIDKDFGRAYYKAQLSANMELPIVGNVFISVRDRDKKHIVDVAKKLHELGFTIYATEGTAKVLRENGIPAILVKKI 533

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_NEIMA (Carbamoyl-phosphate synthase large chain OS=Neisseria meningitidis serogroup A GN=carB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.183e-34
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+   G  ++LE NPRASRTVPFVSKA G PLAK  A  M+G SL + G  KEV+P   +VKEAV PF KF G D +LGPEM STG
Sbjct:  814 LGVVGLMNVQFAVQ-DGVVFVLEVNPRASRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTG 909

HSP 2 Score: 58.151 bits (139), Expect = 1.183e-34
Identity = 29/79 (36.71%), Postives = 50/79 (63.29%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  A+ KAQ+ AG++L  +G +FLS+ +  K  + + A+ F  +G+ I +T GTA ++   G+ V+ + K+
Sbjct:  910 EVMGVGASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICATRGTAQYLTEHGLIVQTINKV 988

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_NEIMB (Carbamoyl-phosphate synthase large chain OS=Neisseria meningitidis serogroup B GN=carB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.541e-34
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+   G  ++LE NPRASRTVPFVSKA G PLAK  A  M+G SL + G  KEV+P   +VKEAV PF KF G D +LGPEM STG
Sbjct:  814 LGVVGLMNVQFAVQ-DGVVFVLEVNPRASRTVPFVSKATGVPLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTG 909

HSP 2 Score: 57.7658 bits (138), Expect = 1.541e-34
Identity = 29/79 (36.71%), Postives = 50/79 (63.29%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  A+ KAQ+ AG++L  +G +FLS+ +  K  + + A+ F  +G+ I +T GTA ++   G+ V+ + K+
Sbjct:  910 EVMGVGASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQVLGYGICATRGTAQYLTEHGLIVQTINKV 988

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_VIBPA (Carbamoyl-phosphate synthase large chain OS=Vibrio parahaemolyticus GN=carB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.007e-34
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+  + + YL+E NPRA+RTVPFVSKA G PLAK AA VM+G+SL   GFTKE+IP + SVKE VLPF KF G D LLGPEM STG
Sbjct:  819 LGVRGLMNTQFAVKDN-EVYLIEVNPRAARTVPFVSKATGAPLAKIAARVMAGQSLESQGFTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTG 914

HSP 2 Score: 44.669 bits (104), Expect = 2.007e-34
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  A+AKA++  G   P  G   LS+ +  K  +  +A   + +G+ + +T GTA  +   GI    V K+
Sbjct:  915 EVMGVGATFAEAYAKAELGCGSVYPEGGRALLSVREGDKQRVVDLASKLVKLGYQLDATHGTAVILGEAGINPRLVNKV 993

[Close]

BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METLZ (Carbamoyl-phosphate synthase large chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=carB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.615e-34
Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 2

Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N QYAI   G  Y+LEANPRASRTVPFVSKA G PLAK AA +M GK L DLG+ ++ I  HV+VKE +LPF +  G D +LGPEM STG
Sbjct:  802 LGVVGLINIQYAIH-KGTVYVLEANPRASRTVPFVSKATGLPLAKIAAKLMLGKKLADLGYQEKEI-SHVAVKEVLLPFSRLPGVDPILGPEMKSTG 896

HSP 2 Score: 56.6102 bits (135), Expect = 2.615e-34
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1

Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EV+GID  F  AF KA  AA   +PL G VF+S+ +  K  +  IA    D+GF++  T GT  F+    I +  V K+
Sbjct:  897 EVIGIDYDFGRAFYKASQAADNTIPLKGNVFISVTNDQKTEILPIARKLYDLGFSLYGTEGTVKFLAQNDIPMNLVRKV 975

The following BLAST results are available for this feature:

BLAST of CX287284 vs. ExPASy Swiss-Prot

BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
CARB_BRUSU	9.076e-35	53.92	Carbamoyl-phosphate synthase large chain OS=Brucel...	[more]
CARB_BRUME	9.076e-35	53.92	Carbamoyl-phosphate synthase large chain OS=Brucel...	[more]
CARB_VIBVY	9.084e-35	65.98	Carbamoyl-phosphate synthase large chain OS=Vibrio...	[more]
CARB_VIBVU	9.084e-35	65.98	Carbamoyl-phosphate synthase large chain OS=Vibrio...	[more]
CARB_METB6	9.086e-35	61.86	Carbamoyl-phosphate synthase large chain OS=Methan...	[more]
CARB2_METJA	9.144e-35	54.21	Carbamoyl-phosphate synthase large chain, C-termin...	[more]
CARB_NEIMA	1.183e-34	60.82	Carbamoyl-phosphate synthase large chain OS=Neisse...	[more]
CARB_NEIMB	1.541e-34	60.82	Carbamoyl-phosphate synthase large chain OS=Neisse...	[more]
CARB_VIBPA	2.007e-34	65.98	Carbamoyl-phosphate synthase large chain OS=Vibrio...	[more]
CARB_METLZ	2.615e-34	62.89	Carbamoyl-phosphate synthase large chain OS=Methan...	[more]

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Properties


Property Name	Value
Genbank description	C01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA