CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_SALTI (Carbamoyl-phosphate synthase large chain OS=Salmonella typhi GN=carB PE=3 SV=3) HSP 1 Score: 119.783 bits (299), Expect = 2.164e-33 Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+A+ + + YL+E NPRA+RTVPFVSKA G PLAK AA VM+GKSL + G T+E+IP + SVKE VLPF KF G D LLGPEM STG Sbjct: 820 LQVRGLMNVQFAVKDN-EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTG 915 HSP 2 Score: 43.5134 bits (101), Expect = 2.164e-33 Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F AFAKAQ+ + + G LS+ + K + +A L GF + +T GTA + GI V K+ Sbjct: 916 EVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKV 994
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METTH (Carbamoyl-phosphate synthase large chain OS=Methanobacterium thermoautotrophicum GN=carB PE=3 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 2.819e-33 Identity = 61/99 (61.62%), Postives = 70/99 (70.71%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGD--AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N QYA+ D Y+LEANPRASRTVPFVSKA G PLAK AA +M G L DLG T+E +HV+VKE+V PF K G D +LGPEM STG Sbjct: 805 LEVVGLINIQYAVKPDSDPSVYILEANPRASRTVPFVSKATGVPLAKMAARLMMGAKLRDLGLTEEKDIEHVAVKESVFPFIKLPGADSVLGPEMKSTG 903 HSP 2 Score: 50.8322 bits (120), Expect = 2.819e-33 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFV 492 E MGID +F IA+ K+Q++A L G VF+S+ D K + I + ++GF I++T GTA V Sbjct: 904 EAMGIDENFGIAYYKSQLSASMDLLNEGKVFISVRDQDKDKIADIVKKADELGFRIMATRGTARAV 969
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CAUCR (Carbamoyl-phosphate synthase large chain OS=Caulobacter crescentus GN=carB PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.105e-33 Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 2 Query: 5 LNVCGLMNCQYAI----TTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LNV GLMN Q+AI + + Y+LE NPRASRTVPFV+K IG P+A AA +M+G+SL G K+V H++VKEAV PF +F G D +LGPEM STG Sbjct: 832 LNVRGLMNVQFAIEEPHSDNPRIYVLEVNPRASRTVPFVAKTIGQPVAAIAAKIMAGESLASFGL-KDVPYDHIAVKEAVFPFARFAGVDTVLGPEMRSTG 931 HSP 2 Score: 58.151 bits (139), Expect = 8.105e-33 Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 Query: 295 EVMGIDM----------SFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+D +F AFAK+Q+ G KLP GT F+S+ + KP + + GF ++ST GT ++ +G+ VE V K+ Sbjct: 932 EVMGLDWKRDGETGMGPAFARAFAKSQLGGGVKLPTKGTAFVSVKESDKPWIVEPVKLLQAAGFKVLSTEGTQAYLAAQGVQVEHVKKV 1020
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ACIC5 (Carbamoyl-phosphate synthase large chain OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=carB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 8.105e-33 Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK--------HVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q+AI Y++E NPRASRTVP+VSKA G PLAK A+ +M+G+ L++ F E I H VK V P+ KF G D +LGPEM STG Sbjct: 830 LKVIGLVNLQFAIQRD-KVYVIEVNPRASRTVPYVSKATGVPLAKIASRLMTGRKLSE--FLPENIASGKDLGTGAHYYVKSPVFPWNKFPGVDTVLGPEMKSTG 931 HSP 2 Score: 74.7146 bits (182), Expect = 8.105e-33 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F AFAKAQ++AG LP SGTVF S+ND K L +A+ ++D+GF IV+T GTA + GI E V K+ Sbjct: 932 EVMGVADNFGEAFAKAQLSAGLILPSSGTVFFSVNDHDKAALVPLAKQYIDLGFQIVATEGTAKVLHKAGIQAESVYKV 1010
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METMJ (Carbamoyl-phosphate synthase large chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=carB PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.037e-32 Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N QYA+ Y+LEANPRASRTVPFV+KA G LAK AA VM G+ L D+G + I +HV+VKE +LPF K G D +LGPEM STG Sbjct: 803 LGVVGLINIQYAVRNDV-VYVLEANPRASRTVPFVAKATGIALAKIAAKVMVGRKLADMGVAEPEI-EHVAVKEVLLPFNKLPGVDTVLGPEMKSTG 897 HSP 2 Score: 57.7658 bits (138), Expect = 3.037e-32 Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F A+ KA AA LP +G VF+S+ D K L +A ++G ++ TSGT F+ G+ V K+ Sbjct: 898 EVMGIDYDFGRAYYKACTAADNTLPTTGNVFISVTDEQKEELLPVARKLRELGLSLYGTSGTVDFLTQNGVEANLVRKV 976
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_NEIGO (Carbamoyl-phosphate synthase large chain OS=Neisseria gonorrhoeae GN=carB PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-31 Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L + GLMN Q+A+ + ++LE NPRA+RTVPFVSKA G LAK A M+G SL + G KEV+P +VKEAV PF KF G D +L PEM STG Sbjct: 814 LGLVGLMNVQFAVQDAV-VFVLEVNPRATRTVPFVSKATGQRLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILNPEMRSTG 909 HSP 2 Score: 57.3806 bits (137), Expect = 1.137e-31 Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ SF A+ KAQ+ AG++L +G +FLS+ + K + + A+ F +G+ I T GTA ++ G+ V+ + K+ Sbjct: 910 EVMGVGRSFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICPTRGTAQYLTEHGLIVQAINKV 988
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HALER (Carbamoyl-phosphate synthase large chain OS=Halomonas eurihalina GN=carB PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.928e-31 Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q A G+ Y++E NPRASRTVPFVSK +G LA+ AA M+G SL + GF +E++P SVKEAV PF KF G D +L PEM STG Sbjct: 819 LGVKGLMNVQLA-WQDGEIYVIEVNPRASRTVPFVSKCVGTSLAQVAARCMAGISLAEQGFVEEIVPHFYSVKEAVFPFAKFPGVDPILSPEMKSTG 914 HSP 2 Score: 52.7582 bits (125), Expect = 1.928e-31 Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLP-LSGT--VFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG +F AF KAQ+ AG+ +P L G FLS+ D K + +A + L +GFT+ +T GTA ++ G+ V+ V K+ Sbjct: 915 EVMGSGDTFAEAFYKAQLGAGEAIPALEGERKAFLSVRDPDKQGVIDVARSLLGLGFTLCATRGTASALQQAGLPVDVVNKV 996
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_YERPE (Carbamoyl-phosphate synthase large chain OS=Yersinia pestis GN=carB PE=3 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 1.593e-30 Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+A+ + + YL+E NPRA+RTVPFVSKA G PLAK AA VM G+SL + G +E+IP + SVKE VLPF KF G D +LGPEM STG Sbjct: 820 LCVRGLMNVQFAVKNN-EVYLIEVNPRAARTVPFVSKATGMPLAKIAARVMVGQSLAEQGMLEEIIPPYYSVKEVVLPFNKFPGVDPILGPEMRSTG 915 HSP 2 Score: 40.4318 bits (93), Expect = 1.593e-30 Identity = 26/79 (32.91%), Postives = 40/79 (50.63%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+ +F AF+KA + + + SG LS+ + K + +A L GF + +T GTA + GI V K+ Sbjct: 916 EVMGVGRTFAEAFSKAMLGSQSGMKKSGRALLSVREGDKHRVVDLAAKLLKQGFELDATHGTAVVLGEAGINPRLVNKV 994
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CLAMS (Carbamoyl-phosphate synthase large chain OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=carB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.701e-30 Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKE------VIPKHVSVKEAVLPFEKFQGWDVL-----LGPEMISTG 295 + V GL+N Q+AI +G Y+LEANPRASRTVPFVSKA+G PLAK A+LVM G S+ +L G E + V+VKEAVLPF++F+ D L LGPEM STG Sbjct: 820 VGVRGLLNVQFAIG-AGVLYVLEANPRASRTVPFVSKALGIPLAKAASLVMVGTSIAELKASGLLPERDGSDVPMDSPVAVKEAVLPFKRFRTKDGLIVDSVLGPEMRSTG 929 HSP 2 Score: 62.7734 bits (151), Expect = 2.701e-30 Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID FP AFAK+Q AA LPLSGTVF+S+ D K + +GF +++T+GTA + GI V K Sbjct: 930 EVMGIDRDFPRAFAKSQEAAFGGLPLSGTVFVSVADRDKRSIVLPVLRLQQLGFEVLATAGTAEILSRNGIQARVVRK 1007
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CLAM3 (Carbamoyl-phosphate synthase large chain OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=carB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.701e-30 Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKE------VIPKHVSVKEAVLPFEKFQGWDVL-----LGPEMISTG 295 + V GL+N Q+AI +G Y+LEANPRASRTVPFVSKA+G PLAK A+LVM G S+ +L G E + V+VKEAVLPF++F+ D L LGPEM STG Sbjct: 820 VGVRGLLNVQFAIG-AGVLYVLEANPRASRTVPFVSKALGIPLAKAASLVMVGTSIAELKASGLLPERDGSDVPMDSPVAVKEAVLPFKRFRTKDGLIVDSVLGPEMRSTG 929 HSP 2 Score: 62.7734 bits (151), Expect = 2.701e-30 Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID FP AFAK+Q AA LPLSGTVF+S+ D K + +GF +++T+GTA + GI V K Sbjct: 930 EVMGIDRDFPRAFAKSQEAAFGGLPLSGTVFVSVADRDKRSIVLPVLRLQQLGFEVLATAGTAEILSRNGIQARVVRK 1007 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |