CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_SALTI (Carbamoyl-phosphate synthase large chain OS=Salmonella typhi GN=carB PE=3 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 2.164e-33
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+  + + YL+E NPRA+RTVPFVSKA G PLAK AA VM+GKSL + G T+E+IP + SVKE VLPF KF G D LLGPEM STG
Sbjct:  820 LQVRGLMNVQFAVKDN-EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTG 915          

HSP 2 Score: 43.5134 bits (101), Expect = 2.164e-33
Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  AFAKAQ+ +   +   G   LS+ +  K  +  +A   L  GF + +T GTA  +   GI    V K+
Sbjct:  916 EVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKV 994          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METTH (Carbamoyl-phosphate synthase large chain OS=Methanobacterium thermoautotrophicum GN=carB PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.819e-33
Identity = 61/99 (61.62%), Postives = 70/99 (70.71%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGD--AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N QYA+    D   Y+LEANPRASRTVPFVSKA G PLAK AA +M G  L DLG T+E   +HV+VKE+V PF K  G D +LGPEM STG
Sbjct:  805 LEVVGLINIQYAVKPDSDPSVYILEANPRASRTVPFVSKATGVPLAKMAARLMMGAKLRDLGLTEEKDIEHVAVKESVFPFIKLPGADSVLGPEMKSTG 903          

HSP 2 Score: 50.8322 bits (120), Expect = 2.819e-33
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFV 492
            E MGID +F IA+ K+Q++A   L   G VF+S+ D  K  +  I +   ++GF I++T GTA  V
Sbjct:  904 EAMGIDENFGIAYYKSQLSASMDLLNEGKVFISVRDQDKDKIADIVKKADELGFRIMATRGTARAV 969          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CAUCR (Carbamoyl-phosphate synthase large chain OS=Caulobacter crescentus GN=carB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.105e-33
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 2
Query:    5 LNVCGLMNCQYAI----TTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LNV GLMN Q+AI    + +   Y+LE NPRASRTVPFV+K IG P+A  AA +M+G+SL   G  K+V   H++VKEAV PF +F G D +LGPEM STG
Sbjct:  832 LNVRGLMNVQFAIEEPHSDNPRIYVLEVNPRASRTVPFVAKTIGQPVAAIAAKIMAGESLASFGL-KDVPYDHIAVKEAVFPFARFAGVDTVLGPEMRSTG 931          

HSP 2 Score: 58.151 bits (139), Expect = 8.105e-33
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1
Query:  295 EVMGIDM----------SFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+D           +F  AFAK+Q+  G KLP  GT F+S+ +  KP +    +     GF ++ST GT  ++  +G+ VE V K+
Sbjct:  932 EVMGLDWKRDGETGMGPAFARAFAKSQLGGGVKLPTKGTAFVSVKESDKPWIVEPVKLLQAAGFKVLSTEGTQAYLAAQGVQVEHVKKV 1020          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ACIC5 (Carbamoyl-phosphate synthase large chain OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=carB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.105e-33
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK--------HVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q+AI      Y++E NPRASRTVP+VSKA G PLAK A+ +M+G+ L++  F  E I          H  VK  V P+ KF G D +LGPEM STG
Sbjct:  830 LKVIGLVNLQFAIQRD-KVYVIEVNPRASRTVPYVSKATGVPLAKIASRLMTGRKLSE--FLPENIASGKDLGTGAHYYVKSPVFPWNKFPGVDTVLGPEMKSTG 931          

HSP 2 Score: 74.7146 bits (182), Expect = 8.105e-33
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  AFAKAQ++AG  LP SGTVF S+ND  K  L  +A+ ++D+GF IV+T GTA  +   GI  E V K+
Sbjct:  932 EVMGVADNFGEAFAKAQLSAGLILPSSGTVFFSVNDHDKAALVPLAKQYIDLGFQIVATEGTAKVLHKAGIQAESVYKV 1010          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_METMJ (Carbamoyl-phosphate synthase large chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=carB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.037e-32
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N QYA+      Y+LEANPRASRTVPFV+KA G  LAK AA VM G+ L D+G  +  I +HV+VKE +LPF K  G D +LGPEM STG
Sbjct:  803 LGVVGLINIQYAVRNDV-VYVLEANPRASRTVPFVAKATGIALAKIAAKVMVGRKLADMGVAEPEI-EHVAVKEVLLPFNKLPGVDTVLGPEMKSTG 897          

HSP 2 Score: 57.7658 bits (138), Expect = 3.037e-32
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  A+ KA  AA   LP +G VF+S+ D  K  L  +A    ++G ++  TSGT  F+   G+    V K+
Sbjct:  898 EVMGIDYDFGRAYYKACTAADNTLPTTGNVFISVTDEQKEELLPVARKLRELGLSLYGTSGTVDFLTQNGVEANLVRKV 976          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_NEIGO (Carbamoyl-phosphate synthase large chain OS=Neisseria gonorrhoeae GN=carB PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-31
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L + GLMN Q+A+  +   ++LE NPRA+RTVPFVSKA G  LAK  A  M+G SL + G  KEV+P   +VKEAV PF KF G D +L PEM STG
Sbjct:  814 LGLVGLMNVQFAVQDAV-VFVLEVNPRATRTVPFVSKATGQRLAKVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILNPEMRSTG 909          

HSP 2 Score: 57.3806 bits (137), Expect = 1.137e-31
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  SF  A+ KAQ+ AG++L  +G +FLS+ +  K  + + A+ F  +G+ I  T GTA ++   G+ V+ + K+
Sbjct:  910 EVMGVGRSFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQALGYGICPTRGTAQYLTEHGLIVQAINKV 988          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HALER (Carbamoyl-phosphate synthase large chain OS=Halomonas eurihalina GN=carB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.928e-31
Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q A    G+ Y++E NPRASRTVPFVSK +G  LA+ AA  M+G SL + GF +E++P   SVKEAV PF KF G D +L PEM STG
Sbjct:  819 LGVKGLMNVQLA-WQDGEIYVIEVNPRASRTVPFVSKCVGTSLAQVAARCMAGISLAEQGFVEEIVPHFYSVKEAVFPFAKFPGVDPILSPEMKSTG 914          

HSP 2 Score: 52.7582 bits (125), Expect = 1.928e-31
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLP-LSGT--VFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG   +F  AF KAQ+ AG+ +P L G    FLS+ D  K  +  +A + L +GFT+ +T GTA  ++  G+ V+ V K+
Sbjct:  915 EVMGSGDTFAEAFYKAQLGAGEAIPALEGERKAFLSVRDPDKQGVIDVARSLLGLGFTLCATRGTASALQQAGLPVDVVNKV 996          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_YERPE (Carbamoyl-phosphate synthase large chain OS=Yersinia pestis GN=carB PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.593e-30
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+  + + YL+E NPRA+RTVPFVSKA G PLAK AA VM G+SL + G  +E+IP + SVKE VLPF KF G D +LGPEM STG
Sbjct:  820 LCVRGLMNVQFAVKNN-EVYLIEVNPRAARTVPFVSKATGMPLAKIAARVMVGQSLAEQGMLEEIIPPYYSVKEVVLPFNKFPGVDPILGPEMRSTG 915          

HSP 2 Score: 40.4318 bits (93), Expect = 1.593e-30
Identity = 26/79 (32.91%), Postives = 40/79 (50.63%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+  +F  AF+KA + +   +  SG   LS+ +  K  +  +A   L  GF + +T GTA  +   GI    V K+
Sbjct:  916 EVMGVGRTFAEAFSKAMLGSQSGMKKSGRALLSVREGDKHRVVDLAAKLLKQGFELDATHGTAVVLGEAGINPRLVNKV 994          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CLAMS (Carbamoyl-phosphate synthase large chain OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=carB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.701e-30
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKE------VIPKHVSVKEAVLPFEKFQGWDVL-----LGPEMISTG 295
            + V GL+N Q+AI  +G  Y+LEANPRASRTVPFVSKA+G PLAK A+LVM G S+ +L   G   E       +   V+VKEAVLPF++F+  D L     LGPEM STG
Sbjct:  820 VGVRGLLNVQFAIG-AGVLYVLEANPRASRTVPFVSKALGIPLAKAASLVMVGTSIAELKASGLLPERDGSDVPMDSPVAVKEAVLPFKRFRTKDGLIVDSVLGPEMRSTG 929          

HSP 2 Score: 62.7734 bits (151), Expect = 2.701e-30
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  FP AFAK+Q AA   LPLSGTVF+S+ D  K  +         +GF +++T+GTA  +   GI    V K
Sbjct:  930 EVMGIDRDFPRAFAKSQEAAFGGLPLSGTVFVSVADRDKRSIVLPVLRLQQLGFEVLATAGTAEILSRNGIQARVVRK 1007          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CLAM3 (Carbamoyl-phosphate synthase large chain OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=carB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.701e-30
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKE------VIPKHVSVKEAVLPFEKFQGWDVL-----LGPEMISTG 295
            + V GL+N Q+AI  +G  Y+LEANPRASRTVPFVSKA+G PLAK A+LVM G S+ +L   G   E       +   V+VKEAVLPF++F+  D L     LGPEM STG
Sbjct:  820 VGVRGLLNVQFAIG-AGVLYVLEANPRASRTVPFVSKALGIPLAKAASLVMVGTSIAELKASGLLPERDGSDVPMDSPVAVKEAVLPFKRFRTKDGLIVDSVLGPEMRSTG 929          

HSP 2 Score: 62.7734 bits (151), Expect = 2.701e-30
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  FP AFAK+Q AA   LPLSGTVF+S+ D  K  +         +GF +++T+GTA  +   GI    V K
Sbjct:  930 EVMGIDRDFPRAFAKSQEAAFGGLPLSGTVFVSVADRDKRSIVLPVLRLQQLGFEVLATAGTAEILSRNGIQARVVRK 1007          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_SALTI2.164e-3364.95Carbamoyl-phosphate synthase large chain OS=Salmon... [more]
CARB_METTH2.819e-3361.62Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_CAUCR8.105e-3356.44Carbamoyl-phosphate synthase large chain OS=Caulob... [more]
CARB_ACIC58.105e-3349.52Carbamoyl-phosphate synthase large chain OS=Acidob... [more]
CARB_METMJ3.037e-3258.76Carbamoyl-phosphate synthase large chain OS=Methan... [more]
CARB_NEIGO1.137e-3155.67Carbamoyl-phosphate synthase large chain OS=Neisse... [more]
CARB_HALER1.928e-3157.73Carbamoyl-phosphate synthase large chain OS=Halomo... [more]
CARB_YERPE1.593e-3061.86Carbamoyl-phosphate synthase large chain OS=Yersin... [more]
CARB_CLAMS2.701e-3054.05Carbamoyl-phosphate synthase large chain OS=Clavib... [more]
CARB_CLAM32.701e-3054.05Carbamoyl-phosphate synthase large chain OS=Clavib... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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