CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB2_METKA (Carbamoyl-phosphate synthase large chain, C-terminal section OS=Methanopyrus kandleri GN=carB2 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.550e-30 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 8 NVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKS----LNDLGF-TKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 NV GL+N Q+ D Y++EANPRASRTVPF+SKA+G PLAK + G+ L+++G + P V+VKEAV FEK+ G D +LGPEM +TG Sbjct: 265 NVIGLINIQFVYDPEEDEVYVIEANPRASRTVPFISKAVGIPLAKIGTKAILGREIPEVLDEMGLEPPDGDPGIVAVKEAVFSFEKWPGVDPVLGPEMKATG 366 HSP 2 Score: 67.0106 bits (162), Expect = 3.550e-30 Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID +F A+ KAQ+AAG +LPL GT +S+ D KP + IA +GF +++T GTA + GI E V K+ Sbjct: 367 EVMGIDRTFGAAYWKAQLAAGHELPLEGTAVISVADRDKPDIVPIARKLQRLGFDLLATRGTASHLREHGIECEVVRKV 445
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THESQ (Carbamoyl-phosphate synthase large chain OS=Thermotoga sp. (strain RQ2) GN=carB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.761e-30 Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----------GFTKEVI----------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V G+ N Q A+ + Y++EANPRASRTVPFVSKAIG P+A+ AA +M G++L +L G + + PK SVKE V+PF KF G DVLLGPEM STG Sbjct: 807 LKVVGVANIQLAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVARIAAKIMVGRNLPELLSEYFPYPTRPGVKVDKLGESEILPTPWPKMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923 HSP 2 Score: 58.5362 bits (140), Expect = 7.761e-30 Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI F AFAKAQIAAG LP +G + ++ D K + D+GF I +T GTA ++ G+ V+ V K+ Sbjct: 924 EVMGIGEDFAEAFAKAQIAAGNPLPTTGAILATVADKDKREAVPLLAHLADMGFEIYATRGTAKALQSHGVEVKVVPKV 1002
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THEMA (Carbamoyl-phosphate synthase large chain OS=Thermotoga maritima GN=carB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.761e-30 Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----------GFTKEVI----------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V G+ N Q A+ + Y++EANPRASRTVPFVSKAIG P+A+ AA +M G++L +L G + + PK SVKE V+PF KF G DVLLGPEM STG Sbjct: 807 LKVVGVANIQLAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVARIAAKIMVGRNLPELLSEYFPYPTRPGVKVDKLGESEILPTPWPKMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923 HSP 2 Score: 58.5362 bits (140), Expect = 7.761e-30 Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI F AFAKAQIAAG LP +G + ++ D K + D+GF I +T GTA ++ G+ V+ V K+ Sbjct: 924 EVMGIGEDFAEAFAKAQIAAGNPLPTTGAILATVADKDKREAVPLLAHLADMGFEIYATRGTAKALQSHGVEVKVVPKV 1002
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THEP1 (Carbamoyl-phosphate synthase large chain OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=carB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.010e-29 Identity = 56/118 (47.46%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----------GFTKEVI----------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L + G+ N Q A+ + Y++EANPRASRTVPFVSKAIG P+A+ AA +M G++L +L G + + PK SVKE V+PF KF G DVLLGPEM STG Sbjct: 807 LKIVGVANIQLAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVARIAAKIMVGRNLPELLSEYFPYPTRPGVKVDKLDESEILPTPWPKMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923 HSP 2 Score: 58.5362 bits (140), Expect = 1.010e-29 Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI F AFAKAQIAAG LP +G + ++ D K + D+GF I +T GTA ++ G+ V+ V K+ Sbjct: 924 EVMGIGEDFAEAFAKAQIAAGNPLPTTGAILATVADKDKREAVPLLAHLADMGFEIYATRGTAKALQSHGVEVKVVPKV 1002
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THENN (Carbamoyl-phosphate synthase large chain OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=carB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.316e-29 Identity = 59/118 (50.00%), Postives = 73/118 (61.86%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL----------GFTK-------EVI----PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L + G+ N Q A+ + Y++EANPRASRTVPFVSKAIG P+AK AA +M G+SL +L TK E++ P+ SVKE V+PF KF G DVLLGPEM STG Sbjct: 807 LKIVGIANIQMAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVAKIAAKIMVGRSLPELLSEYFPYPTRPGTKVDKLGDSEILPTPWPRMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923 HSP 2 Score: 56.6102 bits (135), Expect = 1.316e-29 Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI F AFAKA+IAAG LP G + ++ D K + D+GF I +T GTA ++ G+ V+ V K+ Sbjct: 924 EVMGIGEDFAEAFAKAEIAAGNPLPTEGAILATIADKDKRDAIPLLAHLADMGFEIYATKGTAKALQSHGVDVKVVPKV 1002
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CAMJE (Carbamoyl-phosphate synthase large chain OS=Campylobacter jejuni GN=carB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.230e-29 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND----------LGFTKEVI----PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q+A+ + + Y++E NPRASRT+PFVSKA G PLAK A VM +L + + F +++ PK++SVKEAV PF K G D+ LGPEM STG Sbjct: 821 LGVVGLLNIQFALHNN-ELYMIEVNPRASRTIPFVSKATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAKLSGSDLELGPEMRSTG 930 HSP 2 Score: 59.6918 bits (143), Expect = 2.230e-29 Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI F ++AK+QIA+ LP G VF+SL D K + ++IA ++ +GF +++T GT + G E V K+ Sbjct: 931 EVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYTKKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKI 1009
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MICLC (Carbamoyl-phosphate synthase large chain OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=carB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.780e-29 Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL--------GFTKEVIP--KHVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ S Y++EANPRASRTVPFVSKA G LAK AA + G+S+ DL + +P V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 816 VGVRGLINIQFALA-SDVLYVIEANPRASRTVPFVSKATGVQLAKAAARIGVGESIADLRAAGMLPTAYDGGTLPIGAPVAVKEAVLPFTRFRTAEGRVVDSLLGPEMRSTG 926 HSP 2 Score: 69.3218 bits (168), Expect = 3.780e-29 Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AFAK+Q AAG LP SG VF+S+ + K L A+ +D+GF +VST GTA + GI E V K+ Sbjct: 927 EVMGIDKHFDTAFAKSQSAAGGPLPTSGRVFVSVANRDKRTLVGQAKRLVDLGFQVVSTGGTAEVLRRNGIPAEVVAKI 1005
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_KINRD (Carbamoyl-phosphate synthase large chain OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=carB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.086e-28 Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP-----------KHVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ Y+LEANPRASRTVPFVSKA G LAK AA +M+G S+ DL + ++P VSVKEAVLPF +F+ D LLGPEM STG Sbjct: 817 VGVRGLLNVQFALAADV-LYVLEANPRASRTVPFVSKATGVALAKAAARLMAGTSIRDLR-AEGLLPGRGDGGLLPADSPVSVKEAVLPFARFRTAEGVVVDSLLGPEMRSTG 927 HSP 2 Score: 63.5438 bits (153), Expect = 1.086e-28 Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID+ FP AF K+Q AA LP +GT F+S+ D K + + D+GFT+V+T GTA + GI V K Sbjct: 928 EVMGIDVDFPTAFGKSQTAAYGGLPTAGTAFISVADRDKRAMIFPIKRLADLGFTLVATEGTAQVLRRNGITSTVVRK 1005
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_FUSNN (Carbamoyl-phosphate synthase large chain OS=Fusobacterium nucleatum subsp. nucleatum GN=carB PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.086e-28 Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEV--IPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N QY ++ G+ Y+LE NPRASRTVPF+SK G P+A A + GK L DLGFTK++ I VSVK V F+K + D LGPEM STG Sbjct: 811 LEVKGLINIQYVVS-KGEIYVLEVNPRASRTVPFLSKVTGVPVANIAMQCILGKKLKDLGFTKDIADIGNFVSVKVPVFSFQKLKNVDTTLGPEMKSTG 908 HSP 2 Score: 51.9878 bits (123), Expect = 1.086e-28 Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EV+G D++ A K AAG K+ G V +++D K +A+ F D+GF+I++T GT + E G+ V++V K+ Sbjct: 909 EVIGTDVNLQKALYKGLTAAGIKIKDYGRVLFTIDDKNKEAALNLAKGFSDVGFSILTTEGTGIYFEEYGLKVKKVGKI 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARTS2 (Carbamoyl-phosphate synthase large chain OS=Arthrobacter sp. (strain FB24) GN=carB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.414e-28 Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ S Y+LEANPRASRTVPFVSKA G +AK AAL+ +G ++N L +++P+ VSVKEAVLPF +F+ D LLGPEM STG Sbjct: 818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQMAKAAALIGTGVTINQLRSAYKMLPETGDGSTLPFDAPVSVKEAVLPFSRFRTPEGKVVDSLLGPEMRSTG 929 HSP 2 Score: 60.077 bits (144), Expect = 1.414e-28 Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID F AFAK+Q AA LP G +F+S+ + K + + D+GF IVST GTA + GI V K+ Sbjct: 930 EVMGIDKHFDTAFAKSQAAANNALPTEGKIFVSVANRDKRSVIMGVKRLSDLGFEIVSTGGTADVLRRNGIQATPVRKV 1008 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |