CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB2_METKA (Carbamoyl-phosphate synthase large chain, C-terminal section OS=Methanopyrus kandleri GN=carB2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.550e-30
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    8 NVCGLMNCQYAITTSGD-AYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKS----LNDLGF-TKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            NV GL+N Q+      D  Y++EANPRASRTVPF+SKA+G PLAK     + G+     L+++G    +  P  V+VKEAV  FEK+ G D +LGPEM +TG
Sbjct:  265 NVIGLINIQFVYDPEEDEVYVIEANPRASRTVPFISKAVGIPLAKIGTKAILGREIPEVLDEMGLEPPDGDPGIVAVKEAVFSFEKWPGVDPVLGPEMKATG 366          

HSP 2 Score: 67.0106 bits (162), Expect = 3.550e-30
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID +F  A+ KAQ+AAG +LPL GT  +S+ D  KP +  IA     +GF +++T GTA  +   GI  E V K+
Sbjct:  367 EVMGIDRTFGAAYWKAQLAAGHELPLEGTAVISVADRDKPDIVPIARKLQRLGFDLLATRGTASHLREHGIECEVVRKV 445          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THESQ (Carbamoyl-phosphate synthase large chain OS=Thermotoga sp. (strain RQ2) GN=carB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.761e-30
Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----------GFTKEVI----------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V G+ N Q A+    + Y++EANPRASRTVPFVSKAIG P+A+ AA +M G++L +L           G   + +          PK  SVKE V+PF KF G DVLLGPEM STG
Sbjct:  807 LKVVGVANIQLAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVARIAAKIMVGRNLPELLSEYFPYPTRPGVKVDKLGESEILPTPWPKMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923          

HSP 2 Score: 58.5362 bits (140), Expect = 7.761e-30
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI   F  AFAKAQIAAG  LP +G +  ++ D  K     +     D+GF I +T GTA  ++  G+ V+ V K+
Sbjct:  924 EVMGIGEDFAEAFAKAQIAAGNPLPTTGAILATVADKDKREAVPLLAHLADMGFEIYATRGTAKALQSHGVEVKVVPKV 1002          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THEMA (Carbamoyl-phosphate synthase large chain OS=Thermotoga maritima GN=carB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.761e-30
Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----------GFTKEVI----------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V G+ N Q A+    + Y++EANPRASRTVPFVSKAIG P+A+ AA +M G++L +L           G   + +          PK  SVKE V+PF KF G DVLLGPEM STG
Sbjct:  807 LKVVGVANIQLAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVARIAAKIMVGRNLPELLSEYFPYPTRPGVKVDKLGESEILPTPWPKMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923          

HSP 2 Score: 58.5362 bits (140), Expect = 7.761e-30
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI   F  AFAKAQIAAG  LP +G +  ++ D  K     +     D+GF I +T GTA  ++  G+ V+ V K+
Sbjct:  924 EVMGIGEDFAEAFAKAQIAAGNPLPTTGAILATVADKDKREAVPLLAHLADMGFEIYATRGTAKALQSHGVEVKVVPKV 1002          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THEP1 (Carbamoyl-phosphate synthase large chain OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=carB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.010e-29
Identity = 56/118 (47.46%), Postives = 71/118 (60.17%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL-----------GFTKEVI----------PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L + G+ N Q A+    + Y++EANPRASRTVPFVSKAIG P+A+ AA +M G++L +L           G   + +          PK  SVKE V+PF KF G DVLLGPEM STG
Sbjct:  807 LKIVGVANIQLAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVARIAAKIMVGRNLPELLSEYFPYPTRPGVKVDKLDESEILPTPWPKMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923          

HSP 2 Score: 58.5362 bits (140), Expect = 1.010e-29
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI   F  AFAKAQIAAG  LP +G +  ++ D  K     +     D+GF I +T GTA  ++  G+ V+ V K+
Sbjct:  924 EVMGIGEDFAEAFAKAQIAAGNPLPTTGAILATVADKDKREAVPLLAHLADMGFEIYATRGTAKALQSHGVEVKVVPKV 1002          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_THENN (Carbamoyl-phosphate synthase large chain OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=carB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.316e-29
Identity = 59/118 (50.00%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL----------GFTK-------EVI----PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L + G+ N Q A+    + Y++EANPRASRTVPFVSKAIG P+AK AA +M G+SL +L            TK       E++    P+  SVKE V+PF KF G DVLLGPEM STG
Sbjct:  807 LKIVGIANIQMAVKDE-EIYIIEANPRASRTVPFVSKAIGIPVAKIAAKIMVGRSLPELLSEYFPYPTRPGTKVDKLGDSEILPTPWPRMFSVKEVVIPFHKFPGTDVLLGPEMRSTG 923          

HSP 2 Score: 56.6102 bits (135), Expect = 1.316e-29
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI   F  AFAKA+IAAG  LP  G +  ++ D  K     +     D+GF I +T GTA  ++  G+ V+ V K+
Sbjct:  924 EVMGIGEDFAEAFAKAEIAAGNPLPTEGAILATIADKDKRDAIPLLAHLADMGFEIYATKGTAKALQSHGVDVKVVPKV 1002          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_CAMJE (Carbamoyl-phosphate synthase large chain OS=Campylobacter jejuni GN=carB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.230e-29
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLND----------LGFTKEVI----PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q+A+  + + Y++E NPRASRT+PFVSKA G PLAK A  VM   +L +          + F  +++    PK++SVKEAV PF K  G D+ LGPEM STG
Sbjct:  821 LGVVGLLNIQFALHNN-ELYMIEVNPRASRTIPFVSKATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAKLSGSDLELGPEMRSTG 930          

HSP 2 Score: 59.6918 bits (143), Expect = 2.230e-29
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI   F  ++AK+QIA+   LP  G VF+SL D  K + ++IA  ++ +GF +++T GT   +   G   E V K+
Sbjct:  931 EVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYTKKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKI 1009          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MICLC (Carbamoyl-phosphate synthase large chain OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=carB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.780e-29
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL--------GFTKEVIP--KHVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+  S   Y++EANPRASRTVPFVSKA G  LAK AA +  G+S+ DL         +    +P    V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  816 VGVRGLINIQFALA-SDVLYVIEANPRASRTVPFVSKATGVQLAKAAARIGVGESIADLRAAGMLPTAYDGGTLPIGAPVAVKEAVLPFTRFRTAEGRVVDSLLGPEMRSTG 926          

HSP 2 Score: 69.3218 bits (168), Expect = 3.780e-29
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AFAK+Q AAG  LP SG VF+S+ +  K  L   A+  +D+GF +VST GTA  +   GI  E V K+
Sbjct:  927 EVMGIDKHFDTAFAKSQSAAGGPLPTSGRVFVSVANRDKRTLVGQAKRLVDLGFQVVSTGGTAEVLRRNGIPAEVVAKI 1005          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_KINRD (Carbamoyl-phosphate synthase large chain OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=carB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.086e-28
Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP-----------KHVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+      Y+LEANPRASRTVPFVSKA G  LAK AA +M+G S+ DL   + ++P             VSVKEAVLPF +F+       D LLGPEM STG
Sbjct:  817 VGVRGLLNVQFALAADV-LYVLEANPRASRTVPFVSKATGVALAKAAARLMAGTSIRDLR-AEGLLPGRGDGGLLPADSPVSVKEAVLPFARFRTAEGVVVDSLLGPEMRSTG 927          

HSP 2 Score: 63.5438 bits (153), Expect = 1.086e-28
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID+ FP AF K+Q AA   LP +GT F+S+ D  K  +    +   D+GFT+V+T GTA  +   GI    V K
Sbjct:  928 EVMGIDVDFPTAFGKSQTAAYGGLPTAGTAFISVADRDKRAMIFPIKRLADLGFTLVATEGTAQVLRRNGITSTVVRK 1005          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_FUSNN (Carbamoyl-phosphate synthase large chain OS=Fusobacterium nucleatum subsp. nucleatum GN=carB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.086e-28
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEV--IPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N QY ++  G+ Y+LE NPRASRTVPF+SK  G P+A  A   + GK L DLGFTK++  I   VSVK  V  F+K +  D  LGPEM STG
Sbjct:  811 LEVKGLINIQYVVS-KGEIYVLEVNPRASRTVPFLSKVTGVPVANIAMQCILGKKLKDLGFTKDIADIGNFVSVKVPVFSFQKLKNVDTTLGPEMKSTG 908          

HSP 2 Score: 51.9878 bits (123), Expect = 1.086e-28
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EV+G D++   A  K   AAG K+   G V  +++D  K     +A+ F D+GF+I++T GT  + E  G+ V++V K+
Sbjct:  909 EVIGTDVNLQKALYKGLTAAGIKIKDYGRVLFTIDDKNKEAALNLAKGFSDVGFSILTTEGTGIYFEEYGLKVKKVGKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_ARTS2 (Carbamoyl-phosphate synthase large chain OS=Arthrobacter sp. (strain FB24) GN=carB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.414e-28
Identity = 56/113 (49.56%), Postives = 72/113 (63.72%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK-----------HVSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+  S   Y+LEANPRASRTVPFVSKA G  +AK AAL+ +G ++N L    +++P+            VSVKEAVLPF +F+       D LLGPEM STG
Sbjct:  818 VGVRGLINIQFALA-SDVLYVLEANPRASRTVPFVSKATGVQMAKAAALIGTGVTINQLRSAYKMLPETGDGSTLPFDAPVSVKEAVLPFSRFRTPEGKVVDSLLGPEMRSTG 929          

HSP 2 Score: 60.077 bits (144), Expect = 1.414e-28
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID  F  AFAK+Q AA   LP  G +F+S+ +  K  +    +   D+GF IVST GTA  +   GI    V K+
Sbjct:  930 EVMGIDKHFDTAFAKSQAAANNALPTEGKIFVSVANRDKRSVIMGVKRLSDLGFEIVSTGGTADVLRRNGIQATPVRKV 1008          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB2_METKA3.550e-3049.02Carbamoyl-phosphate synthase large chain, C-termin... [more]
CARB_THESQ7.761e-3048.31Carbamoyl-phosphate synthase large chain OS=Thermo... [more]
CARB_THEMA7.761e-3048.31Carbamoyl-phosphate synthase large chain OS=Thermo... [more]
CARB_THEP11.010e-2947.46Carbamoyl-phosphate synthase large chain OS=Thermo... [more]
CARB_THENN1.316e-2950.00Carbamoyl-phosphate synthase large chain OS=Thermo... [more]
CARB_CAMJE2.230e-2947.75Carbamoyl-phosphate synthase large chain OS=Campyl... [more]
CARB_MICLC3.780e-2949.11Carbamoyl-phosphate synthase large chain OS=Microc... [more]
CARB_KINRD1.086e-2850.44Carbamoyl-phosphate synthase large chain OS=Kineoc... [more]
CARB_FUSNN1.086e-2853.54Carbamoyl-phosphate synthase large chain OS=Fusoba... [more]
CARB_ARTS21.414e-2849.56Carbamoyl-phosphate synthase large chain OS=Arthro... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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