CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACHD (Carbamoyl-phosphate synthase pyrimidine-specific large chain OS=Bacillus halodurans GN=pyrAB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-27
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L + GL+N Q+ +    D Y+LE NPR+SRTVPF+SK  G P+A  A  VM GK+L  LG+     P  K VSVK  V  F K +  D+ LGPEM STG
Sbjct:  811 LRIVGLLNIQF-VWHKDDVYVLEVNPRSSRTVPFLSKVTGVPMANVATKVMLGKTLPQLGYETGYHPEAKEVSVKVPVFSFAKLRRVDITLGPEMKSTG 908          

HSP 2 Score: 58.151 bits (139), Expect = 1.167e-27
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  K  IA+G  +P  G+V  ++ D  K     +A+ F  IGF+I++T GTAH +  +GI V  V K+
Sbjct:  909 EVMGRDKTLEKALYKGLIASGMSIPTHGSVLFTIADKDKQEAISLAKRFYQIGFSILATEGTAHILHEEGIPVTTVNKI 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_DEIGD (Carbamoyl-phosphate synthase large chain OS=Deinococcus geothermalis (strain DSM 11300) GN=carB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.978e-27
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q+A+   G AY+LEANPRASRTVPFVSKA+ HPLAKYAA +  G++L  +GFT+  +P   +VKE  LPF KF+G   +LGPEM STG
Sbjct:  813 LGVKGLLNVQWAVK-DGVAYILEANPRASRTVPFVSKAVNHPLAKYAARIAVGQTLEQIGFTETPLPDLYAVKEVHLPFLKFKGVSPILGPEMKSTG 908          

HSP 2 Score: 31.187 bits (69), Expect = 1.978e-27
Identity = 15/32 (46.88%), Postives = 20/32 (62.50%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFL 390
            E MGID    +A+ +A++ A   LPLSGT  L
Sbjct:  909 ESMGIDTDPYLAYYRAELGAKSNLPLSGTALL 940          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_NATTJ (Carbamoyl-phosphate synthase large chain OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=carB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.347e-27
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK--HVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN+ G++N QY +  +G  Y++E NPRASRTVPF+SK  G P+ K A   M G+S  D G+   ++P+  + +VK  V  F K    D  LGPEM STG
Sbjct:  846 LNIKGIINIQYVVY-NGKVYVIEVNPRASRTVPFISKITGIPMVKIATKAMMGQSFQDQGYKPGLMPEPDYYAVKAPVFSFAKLTRVDTSLGPEMKSTG 943          

HSP 2 Score: 58.151 bits (139), Expect = 3.347e-27
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGID     A  KA +A+G  + L+G V +++ D  K  +  + E F  +G  I +TSGTA F+  +GI VE+V K+
Sbjct:  944 EVMGIDYDLNTALYKAMLASGFSINLNGGVLVTVADRDKEAVRPLVERFQKLGLKIFATSGTAEFLRNQGIDVEQVPKI 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BEUC1 (Carbamoyl-phosphate synthase large chain OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=carB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.357e-27
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKEVIPKH------VSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A++ S   Y+LEANPRASRTVPFV+KA G PLAK A+L+M+G ++ DL   G    V   +      V+VKEAVLPF++F+       D +LGPEM STG
Sbjct:  826 VGVRGLLNVQFALS-SDVLYVLEANPRASRTVPFVAKATGVPLAKAASLLMAGATIADLRASGHLPAVDGTYAHPSSPVAVKEAVLPFKRFRTRAGTVVDTVLGPEMRSTG 935          

HSP 2 Score: 56.225 bits (134), Expect = 4.357e-27
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507
            EVMG D+  P AFAK+Q AA   LP SG VF+S+ D  K  +       +++GF I++T+GTA  +   GI
Sbjct:  936 EVMGYDVDVPAAFAKSQAAAYGGLPTSGRVFVSVADRDKRSIVFPVARLVELGFEILATTGTADVLRRYGI 1006          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCGI (Carbamoyl-phosphate synthase large chain OS=Mycobacterium gilvum (strain PYR-GCK) GN=carB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.671e-27
Identity = 56/114 (49.12%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL------------GFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G S+ +L              T    P  V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAELREEGVLARTGDGAATARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944          

HSP 2 Score: 61.2326 bits (147), Expect = 5.671e-27
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGI   F  AFAK+Q AA   LP SGTVF+S+ +  K  L    +   D+GF I++T GTA  +   GI  E V K
Sbjct:  945 EVMGIAHDFGSAFAKSQTAAYGSLPASGTVFVSVANRDKRSLVFPVKRLADLGFKILATEGTAEMLRRNGIPCEEVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_KOCRD (Carbamoyl-phosphate synthase large chain OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=carB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.672e-27
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH-----------VSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295
            + V GL+N Q+A+  S   Y++EANPRASRTVPFVSKA G  +AK AAL+ +G+++  L   + V+P              +VKE VLPF +F+       D LLGPEM STG
Sbjct:  822 VGVKGLINLQFALA-SDVLYVIEANPRASRTVPFVSKATGVQMAKAAALIGTGRTVAQLR-AEGVLPADHDGTTLPEGTPTAVKEVVLPFARFRTPEGTVVDSLLGPEMRSTG 932          

HSP 2 Score: 65.0846 bits (157), Expect = 5.672e-27
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG+D  F  AFAKAQ AAG  LP SG++F+S+ +  K       + F D+GF IVST GTA  +   GI    V K+
Sbjct:  933 EVMGVDKYFDTAFAKAQAAAGGPLPTSGSLFVSVANKDKRSAVIPVKMFADLGFEIVSTGGTAEVLRRNGIESTVVAKI 1011          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCSS (Carbamoyl-phosphate synthase large chain OS=Mycobacterium sp. (strain MCS) GN=carB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.251e-26
Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL------------NDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G S+             D   T    P  V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944          

HSP 2 Score: 60.8474 bits (146), Expect = 1.251e-26
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +   GI  + V K
Sbjct:  945 EVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCSK (Carbamoyl-phosphate synthase large chain OS=Mycobacterium sp. (strain KMS) GN=carB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.251e-26
Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL------------NDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G S+             D   T    P  V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944          

HSP 2 Score: 60.8474 bits (146), Expect = 1.251e-26
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +   GI  + V K
Sbjct:  945 EVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCSJ (Carbamoyl-phosphate synthase large chain OS=Mycobacterium sp. (strain JLS) GN=carB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.251e-26
Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL------------NDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G S+             D   T    P  V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944          

HSP 2 Score: 60.8474 bits (146), Expect = 1.251e-26
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +   GI  + V K
Sbjct:  945 EVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HELPY (Carbamoyl-phosphate synthase large chain OS=Helicobacter pylori GN=carB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.628e-26
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL----------NDLGFTKEV----IPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q+A+  +   YL+E NPRASRTVPF+SKA+G PLAK A  VM  + L          N +G++K V    +P  V++KEAV PF K  G D++LGPEM STG
Sbjct:  821 LGVVGLLNIQFAVHQNS-LYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTG 930          

HSP 2 Score: 48.521 bits (114), Expect = 1.628e-26
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI  S  +AF KAQ A    +   G +F+S+ D  K     + +  + +GF + +T GT   +E  G+   +VLK+
Sbjct:  931 EVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKI 1009          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_BACHD1.167e-2749.49Carbamoyl-phosphate synthase pyrimidine-specific l... [more]
CARB_DEIGD1.978e-2759.79Carbamoyl-phosphate synthase large chain OS=Deinoc... [more]
CARB_NATTJ3.347e-2745.45Carbamoyl-phosphate synthase large chain OS=Natran... [more]
CARB_BEUC14.357e-2750.45Carbamoyl-phosphate synthase large chain OS=Beuten... [more]
CARB_MYCGI5.671e-2749.12Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_KOCRD5.672e-2746.02Carbamoyl-phosphate synthase large chain OS=Kocuri... [more]
CARB_MYCSS1.251e-2649.12Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_MYCSK1.251e-2649.12Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_MYCSJ1.251e-2649.12Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_HELPY1.628e-2649.55Carbamoyl-phosphate synthase large chain OS=Helico... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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