CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BACHD (Carbamoyl-phosphate synthase pyrimidine-specific large chain OS=Bacillus halodurans GN=pyrAB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-27 Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIP--KHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L + GL+N Q+ + D Y+LE NPR+SRTVPF+SK G P+A A VM GK+L LG+ P K VSVK V F K + D+ LGPEM STG Sbjct: 811 LRIVGLLNIQF-VWHKDDVYVLEVNPRSSRTVPFLSKVTGVPMANVATKVMLGKTLPQLGYETGYHPEAKEVSVKVPVFSFAKLRRVDITLGPEMKSTG 908 HSP 2 Score: 58.151 bits (139), Expect = 1.167e-27 Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D + A K IA+G +P G+V ++ D K +A+ F IGF+I++T GTAH + +GI V V K+ Sbjct: 909 EVMGRDKTLEKALYKGLIASGMSIPTHGSVLFTIADKDKQEAISLAKRFYQIGFSILATEGTAHILHEEGIPVTTVNKI 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_DEIGD (Carbamoyl-phosphate synthase large chain OS=Deinococcus geothermalis (strain DSM 11300) GN=carB PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.978e-27 Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q+A+ G AY+LEANPRASRTVPFVSKA+ HPLAKYAA + G++L +GFT+ +P +VKE LPF KF+G +LGPEM STG Sbjct: 813 LGVKGLLNVQWAVK-DGVAYILEANPRASRTVPFVSKAVNHPLAKYAARIAVGQTLEQIGFTETPLPDLYAVKEVHLPFLKFKGVSPILGPEMKSTG 908 HSP 2 Score: 31.187 bits (69), Expect = 1.978e-27 Identity = 15/32 (46.88%), Postives = 20/32 (62.50%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFL 390 E MGID +A+ +A++ A LPLSGT L Sbjct: 909 ESMGIDTDPYLAYYRAELGAKSNLPLSGTALL 940
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_NATTJ (Carbamoyl-phosphate synthase large chain OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=carB PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.347e-27 Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPK--HVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LN+ G++N QY + +G Y++E NPRASRTVPF+SK G P+ K A M G+S D G+ ++P+ + +VK V F K D LGPEM STG Sbjct: 846 LNIKGIINIQYVVY-NGKVYVIEVNPRASRTVPFISKITGIPMVKIATKAMMGQSFQDQGYKPGLMPEPDYYAVKAPVFSFAKLTRVDTSLGPEMKSTG 943 HSP 2 Score: 58.151 bits (139), Expect = 3.347e-27 Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGID A KA +A+G + L+G V +++ D K + + E F +G I +TSGTA F+ +GI VE+V K+ Sbjct: 944 EVMGIDYDLNTALYKAMLASGFSINLNGGVLVTVADRDKEAVRPLVERFQKLGLKIFATSGTAEFLRNQGIDVEQVPKI 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_BEUC1 (Carbamoyl-phosphate synthase large chain OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=carB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.357e-27 Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL---GFTKEVIPKH------VSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A++ S Y+LEANPRASRTVPFV+KA G PLAK A+L+M+G ++ DL G V + V+VKEAVLPF++F+ D +LGPEM STG Sbjct: 826 VGVRGLLNVQFALS-SDVLYVLEANPRASRTVPFVAKATGVPLAKAASLLMAGATIADLRASGHLPAVDGTYAHPSSPVAVKEAVLPFKRFRTRAGTVVDTVLGPEMRSTG 935 HSP 2 Score: 56.225 bits (134), Expect = 4.357e-27 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGI 507 EVMG D+ P AFAK+Q AA LP SG VF+S+ D K + +++GF I++T+GTA + GI Sbjct: 936 EVMGYDVDVPAAFAKSQAAAYGGLPTSGRVFVSVADRDKRSIVFPVARLVELGFEILATTGTADVLRRYGI 1006
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCGI (Carbamoyl-phosphate synthase large chain OS=Mycobacterium gilvum (strain PYR-GCK) GN=carB PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.671e-27 Identity = 56/114 (49.12%), Postives = 66/114 (57.89%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL------------GFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G S+ +L T P V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAELREEGVLARTGDGAATARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944 HSP 2 Score: 61.2326 bits (147), Expect = 5.671e-27 Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGI F AFAK+Q AA LP SGTVF+S+ + K L + D+GF I++T GTA + GI E V K Sbjct: 945 EVMGIAHDFGSAFAKSQTAAYGSLPASGTVFVSVANRDKRSLVFPVKRLADLGFKILATEGTAEMLRRNGIPCEEVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_KOCRD (Carbamoyl-phosphate synthase large chain OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=carB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.672e-27 Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH-----------VSVKEAVLPFEKFQG-----WDVLLGPEMISTG 295 + V GL+N Q+A+ S Y++EANPRASRTVPFVSKA G +AK AAL+ +G+++ L + V+P +VKE VLPF +F+ D LLGPEM STG Sbjct: 822 VGVKGLINLQFALA-SDVLYVIEANPRASRTVPFVSKATGVQMAKAAALIGTGRTVAQLR-AEGVLPADHDGTTLPEGTPTAVKEVVLPFARFRTPEGTVVDSLLGPEMRSTG 932 HSP 2 Score: 65.0846 bits (157), Expect = 5.672e-27 Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG+D F AFAKAQ AAG LP SG++F+S+ + K + F D+GF IVST GTA + GI V K+ Sbjct: 933 EVMGVDKYFDTAFAKAQAAAGGPLPTSGSLFVSVANKDKRSAVIPVKMFADLGFEIVSTGGTAEVLRRNGIESTVVAKI 1011
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCSS (Carbamoyl-phosphate synthase large chain OS=Mycobacterium sp. (strain MCS) GN=carB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.251e-26 Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL------------NDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G S+ D T P V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944 HSP 2 Score: 60.8474 bits (146), Expect = 1.251e-26 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + GI + V K Sbjct: 945 EVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCSK (Carbamoyl-phosphate synthase large chain OS=Mycobacterium sp. (strain KMS) GN=carB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.251e-26 Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL------------NDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G S+ D T P V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944 HSP 2 Score: 60.8474 bits (146), Expect = 1.251e-26 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + GI + V K Sbjct: 945 EVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCSJ (Carbamoyl-phosphate synthase large chain OS=Mycobacterium sp. (strain JLS) GN=carB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.251e-26 Identity = 56/114 (49.12%), Postives = 65/114 (57.02%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL------------NDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G S+ D T P V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 VGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGASIAQLREEGVLAATGDGATTARNAP--VAVKEAVLPFHRFRKADGAQIDSLLGPEMKSTG 944 HSP 2 Score: 60.8474 bits (146), Expect = 1.251e-26 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + GI + V K Sbjct: 945 EVMGIDHDFGSAFAKSQTAAYGSLPSEGTVFVSVANRDKRSLVFPVKRLADLGFKVLATEGTAEMLRRNGIPCDEVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HELPY (Carbamoyl-phosphate synthase large chain OS=Helicobacter pylori GN=carB PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.628e-26 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSL----------NDLGFTKEV----IPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q+A+ + YL+E NPRASRTVPF+SKA+G PLAK A VM + L N +G++K V +P V++KEAV PF K G D++LGPEM STG Sbjct: 821 LGVVGLLNIQFAVHQNS-LYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTG 930 HSP 2 Score: 48.521 bits (114), Expect = 1.628e-26 Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI S +AF KAQ A + G +F+S+ D K + + + +GF + +T GT +E G+ +VLK+ Sbjct: 931 EVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKI 1009 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |