CX287284

Overview
NameCX287284
Unique NameCX287284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HELPJ (Carbamoyl-phosphate synthase large chain OS=Helicobacter pylori J99 GN=carB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.759e-26
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL--------------GFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GL+N Q+A+  +   YL+E NPRASRTVPF+SKA+G PLAK A  VM  + L +               G  K  +P  V++KEAV PF K  G D++LGPEM STG
Sbjct:  821 LGVVGLLNIQFAVYQNS-LYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTG 930          

HSP 2 Score: 49.2914 bits (116), Expect = 2.759e-26
Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMGI  S  +AF KAQ A    +   G +F+S+ D  K     + +  +++GF + +T GT   +E  G+   +VLK+
Sbjct:  931 EVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVELGFELCTTEGTHKALEKAGVKSLKVLKI 1009          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCVP (Carbamoyl-phosphate synthase large chain OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=carB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.589e-26
Identity = 56/114 (49.12%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG------------KSLNDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G             S  D   T    P  V+VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 IGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIAQLREEGVLASTGDGAVTARNAP--VAVKEAVLPFHRFRKADGSQIDSLLGPEMKSTG 944          

HSP 2 Score: 59.6918 bits (143), Expect = 3.589e-26
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGI   F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +   GI  E V K
Sbjct:  945 EVMGIAADFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTAEMLRRNGIPCEEVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACC3 (Carbamoyl-phosphate synthase large chain OS=Lactobacillus casei (strain ATCC 334) GN=carB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.592e-26
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH--VSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN  GLMN Q+ I  +G AY++E NPRASRTVPF+SK     LA+ A L + G SL + GF   ++P    + VK  V  F K    D LLGPEM STG
Sbjct:  811 LNCIGLMNVQFIIH-AGKAYVIEVNPRASRTVPFLSKVTNIKLAQVATLAILGLSLKEQGFETGLLPNQSGIHVKSPVFSFSKLNHVDSLLGPEMKSTG 908          

HSP 2 Score: 55.0694 bits (131), Expect = 3.592e-26
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  KA  AAG  LP  G   +++ D  K     +A+ F ++G+ +V+TSGTA   E  GI V  + K+
Sbjct:  909 EVMGSDTTLAKALYKAFEAAGMHLPQFGRALITVKDADKAEATALAKRFREVGYQLVATSGTAKAFEKTGITVSTIEKL 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCTU (Carbamoyl-phosphate synthase large chain OS=Mycobacterium tuberculosis GN=carB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.672e-26
Identity = 52/112 (46.43%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL----------GFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G ++  L                    ++VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 IGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIAQLRAEGLLAVTGDGAHAARNAPIAVKEAVLPFHRFRRADGAAIDSLLGPEMKSTG 944          

HSP 2 Score: 60.8474 bits (146), Expect = 4.672e-26
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +   GI  + V K
Sbjct:  945 EVMGIDRDFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTAEMLRRNGIPCDDVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCBO (Carbamoyl-phosphate synthase large chain OS=Mycobacterium bovis GN=carB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.672e-26
Identity = 52/112 (46.43%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL----------GFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295
            + V GL+N QYA+      Y+LEANPRASRTVPFVSKA   PLAK  A +M G ++  L                    ++VKEAVLPF +F+       D LLGPEM STG
Sbjct:  834 IGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIAQLRAEGLLAVTGDGAHAARNAPIAVKEAVLPFHRFRRADGAAIDSLLGPEMKSTG 944          

HSP 2 Score: 60.8474 bits (146), Expect = 4.672e-26
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528
            EVMGID  F  AFAK+Q AA   LP  GTVF+S+ +  K  L    +   D+GF +++T GTA  +   GI  + V K
Sbjct:  945 EVMGIDRDFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTAEMLRRNGIPCDDVRK 1022          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACCB (Carbamoyl-phosphate synthase large chain OS=Lactobacillus casei (strain BL23) GN=carB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.675e-26
Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH--VSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN  GLMN Q+ I   G AY++E NPRASRTVPF+SK     LA+ A L + G SL + GF   ++P    + VK  V  F K    D LLGPEM STG
Sbjct:  811 LNCIGLMNVQFIIH-DGKAYVIEVNPRASRTVPFLSKVTNIKLAQVATLAILGLSLKEQGFETGLLPNQSGIHVKSPVFSFSKLNHVDSLLGPEMKSTG 908          

HSP 2 Score: 55.0694 bits (131), Expect = 4.675e-26
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +   A  KA  AAG  LP  G   +++ D  K     +A+ F ++G+ +V+TSGTA   E  GI V  + K+
Sbjct:  909 EVMGSDTTLAKALYKAFEAAGMHLPQFGRALITVKDADKAEATALAKRFREVGYQLVATSGTAKAFEKAGITVSTIEKL 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACH4 (Carbamoyl-phosphate synthase large chain OS=Lactobacillus helveticus (strain DPC 4571) GN=carB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.085e-26
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN  G+MN Q+ I   GD Y++E NPRASRTVPF+SK  G  +A+ A  V+ G+SL   G+   +   P+ +SVK  V  F K    D  LGPEM STG
Sbjct:  811 LNCKGIMNIQF-IVRDGDVYVIEVNPRASRTVPFLSKITGIEMAQVATRVIMGESLEQQGYADGLAPEPEMISVKAPVFSFSKLADVDSYLGPEMKSTG 908          

HSP 2 Score: 55.8398 bits (133), Expect = 6.085e-26
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +F  A  KA   A  +LP +G V L++ D  K  +  IA+ F  IG+ I +T GTA+F++   + VE V K+
Sbjct:  909 EVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDRDKEKILPIAKRFARIGYRIFATKGTANFLKKNDLHVELVTKV 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACDB (Carbamoyl-phosphate synthase large chain OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=carB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.085e-26
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN  G+MN Q+ I   GD Y++E NPRASRTVPF+SK  G  +A+ A  V+ G+SL   G+   +   P+ +SVK  V  F K    D  LGPEM STG
Sbjct:  811 LNCKGIMNIQF-IVRDGDVYVIEVNPRASRTVPFLSKITGIEMAQVATRVIMGESLEQQGYADGLAPEPEMISVKAPVFSFSKLADVDSYLGPEMKSTG 908          

HSP 2 Score: 55.8398 bits (133), Expect = 6.085e-26
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +F  A  KA   A  +LP +G V L++ D  K  +  IA+ F  IG+ I +T GTA+F++   + VE V K+
Sbjct:  909 EVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDRDKEKILPIAKRFARIGYRIFATKGTANFLKKNDLHVELVTKV 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACJO (Carbamoyl-phosphate synthase large chain OS=Lactobacillus johnsonii GN=carB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.919e-26
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            LN  G+MN Q+ I  +G+ Y++E NPRASRTVPF+SK  G  +A+ A  V+ G+SL   G++  +   P+ +SVK  V  F K    D  LGPEM STG
Sbjct:  811 LNCVGIMNIQF-IVRNGEVYVIEVNPRASRTVPFLSKITGIEMAQVATRVIMGESLAQQGYSDGLAPEPEMISVKAPVFSFSKLADVDSYLGPEMKSTG 908          

HSP 2 Score: 56.225 bits (134), Expect = 7.919e-26
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531
            EVMG D +F  A  KA   A  +LP +G V L++ D  K  +  IA+ F  IG+ I +T GTA F++  G+ V+ V K+
Sbjct:  909 EVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDKDKEKILPIAKRFARIGYRIFATKGTADFLKNNGLHVDLVTKV 987          
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_DEIDV (Carbamoyl-phosphate synthase large chain OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=carB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.031e-25
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295
            L V GLMN Q+A+   G AY+LEANPRASRTVPFVSKA+ HPLAK AA +  G +L  +G T+       SVKE  LPF KF+G   +LGPEM STG
Sbjct:  813 LGVRGLMNVQWAVK-DGTAYILEANPRASRTVPFVSKAVNHPLAKSAARIAVGHTLEQIGLTETPEAAMYSVKEVHLPFLKFKGVSPILGPEMKSTG 908          

HSP 2 Score: 33.4982 bits (75), Expect = 1.031e-25
Identity = 22/57 (38.60%), Postives = 29/57 (50.88%), Query Frame = 1
Query:  295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIV 465
            E MGID    +AF +AQ+ A   LPLSGT  L L D     L+ +A      G  ++
Sbjct:  909 ESMGIDADPYLAFYRAQLGAKSYLPLSGTALL-LGD----GLDEVASTLQGAGLNVI 960          
The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CARB_HELPJ2.759e-2647.75Carbamoyl-phosphate synthase large chain OS=Helico... [more]
CARB_MYCVP3.589e-2649.12Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_LACC33.592e-2649.49Carbamoyl-phosphate synthase large chain OS=Lactob... [more]
CARB_MYCTU4.672e-2646.43Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_MYCBO4.672e-2646.43Carbamoyl-phosphate synthase large chain OS=Mycoba... [more]
CARB_LACCB4.675e-2649.49Carbamoyl-phosphate synthase large chain OS=Lactob... [more]
CARB_LACH46.085e-2647.47Carbamoyl-phosphate synthase large chain OS=Lactob... [more]
CARB_LACDB6.085e-2647.47Carbamoyl-phosphate synthase large chain OS=Lactob... [more]
CARB_LACJO7.919e-2646.46Carbamoyl-phosphate synthase large chain OS=Lactob... [more]
CARB_DEIDV1.031e-2558.76Carbamoyl-phosphate synthase large chain OS=Deinoc... [more]

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Properties
Property NameValue
Genbank descriptionC01006H01SK Veg1 Citrus clementina cDNA clone C01006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bp
TAGATTGAATGTGTGTGGACTCATGAATTGTCAGTATGCAATTACAACAT
CTGGGGATGCTTACTTGCTTGAGGCAAATCCCCGTGCTTCCCGTACCGTC
CCATTTGTGTCAAAAGCAATTGGGCACCCATTGGCCAAATATGCTGCTCT
TGTTATGTCGGGGAAGTCACTTAACGATTTAGGTTTCACAAAAGAGGTGA
TCCCCAAGCATGTGTCTGTTAAGGAAGCAGTTCTGCCCTTTGAGAAGTTC
CAAGGCTGGGATGTGCTGTTAGGGCCTGAGATGATAAGCACTGGGAGGTG
ATGGGTATAGACATGTCCTTCCCTATTGCATTTGCCAAGGCTCAAATTGC
TGCAGGGCAGAAGCTACCACTTTCAGGCACTGTGTTCCTCAGCTTAAATG
ACTTGACAAAGCCCCATCTTGAGAGAATTGCAGAGGCATTCTTAGATATA
GGATTCACGATTGTTTCAACTTCTGGGACAGCTCACTTTGTTGAATTAAA
AGGTATTGCTGTGGAAAGAGTGCTGAAGATGCA
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