CX287284
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_HELPJ (Carbamoyl-phosphate synthase large chain OS=Helicobacter pylori J99 GN=carB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.759e-26 Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL--------------GFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GL+N Q+A+ + YL+E NPRASRTVPF+SKA+G PLAK A VM + L + G K +P V++KEAV PF K G D++LGPEM STG Sbjct: 821 LGVVGLLNIQFAVYQNS-LYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTG 930 HSP 2 Score: 49.2914 bits (116), Expect = 2.759e-26 Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMGI S +AF KAQ A + G +F+S+ D K + + +++GF + +T GT +E G+ +VLK+ Sbjct: 931 EVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVELGFELCTTEGTHKALEKAGVKSLKVLKI 1009
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCVP (Carbamoyl-phosphate synthase large chain OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=carB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.589e-26 Identity = 56/114 (49.12%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSG------------KSLNDLGFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G S D T P V+VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 IGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIAQLREEGVLASTGDGAVTARNAP--VAVKEAVLPFHRFRKADGSQIDSLLGPEMKSTG 944 HSP 2 Score: 59.6918 bits (143), Expect = 3.589e-26 Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGI F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + GI E V K Sbjct: 945 EVMGIAADFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTAEMLRRNGIPCEEVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACC3 (Carbamoyl-phosphate synthase large chain OS=Lactobacillus casei (strain ATCC 334) GN=carB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.592e-26 Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH--VSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LN GLMN Q+ I +G AY++E NPRASRTVPF+SK LA+ A L + G SL + GF ++P + VK V F K D LLGPEM STG Sbjct: 811 LNCIGLMNVQFIIH-AGKAYVIEVNPRASRTVPFLSKVTNIKLAQVATLAILGLSLKEQGFETGLLPNQSGIHVKSPVFSFSKLNHVDSLLGPEMKSTG 908 HSP 2 Score: 55.0694 bits (131), Expect = 3.592e-26 Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D + A KA AAG LP G +++ D K +A+ F ++G+ +V+TSGTA E GI V + K+ Sbjct: 909 EVMGSDTTLAKALYKAFEAAGMHLPQFGRALITVKDADKAEATALAKRFREVGYQLVATSGTAKAFEKTGITVSTIEKL 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCTU (Carbamoyl-phosphate synthase large chain OS=Mycobacterium tuberculosis GN=carB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.672e-26 Identity = 52/112 (46.43%), Postives = 63/112 (56.25%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL----------GFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G ++ L ++VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 IGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIAQLRAEGLLAVTGDGAHAARNAPIAVKEAVLPFHRFRRADGAAIDSLLGPEMKSTG 944 HSP 2 Score: 60.8474 bits (146), Expect = 4.672e-26 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + GI + V K Sbjct: 945 EVMGIDRDFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTAEMLRRNGIPCDDVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_MYCBO (Carbamoyl-phosphate synthase large chain OS=Mycobacterium bovis GN=carB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.672e-26 Identity = 52/112 (46.43%), Postives = 63/112 (56.25%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDL----------GFTKEVIPKHVSVKEAVLPFEKFQ-----GWDVLLGPEMISTG 295 + V GL+N QYA+ Y+LEANPRASRTVPFVSKA PLAK A +M G ++ L ++VKEAVLPF +F+ D LLGPEM STG Sbjct: 834 IGVVGLLNVQYALKDDV-LYVLEANPRASRTVPFVSKATAVPLAKACARIMLGATIAQLRAEGLLAVTGDGAHAARNAPIAVKEAVLPFHRFRRADGAAIDSLLGPEMKSTG 944 HSP 2 Score: 60.8474 bits (146), Expect = 4.672e-26 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLK 528 EVMGID F AFAK+Q AA LP GTVF+S+ + K L + D+GF +++T GTA + GI + V K Sbjct: 945 EVMGIDRDFGSAFAKSQTAAYGSLPAQGTVFVSVANRDKRSLVFPVKRLADLGFRVLATEGTAEMLRRNGIPCDDVRK 1022
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACCB (Carbamoyl-phosphate synthase large chain OS=Lactobacillus casei (strain BL23) GN=carB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.675e-26 Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKH--VSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LN GLMN Q+ I G AY++E NPRASRTVPF+SK LA+ A L + G SL + GF ++P + VK V F K D LLGPEM STG Sbjct: 811 LNCIGLMNVQFIIH-DGKAYVIEVNPRASRTVPFLSKVTNIKLAQVATLAILGLSLKEQGFETGLLPNQSGIHVKSPVFSFSKLNHVDSLLGPEMKSTG 908 HSP 2 Score: 55.0694 bits (131), Expect = 4.675e-26 Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D + A KA AAG LP G +++ D K +A+ F ++G+ +V+TSGTA E GI V + K+ Sbjct: 909 EVMGSDTTLAKALYKAFEAAGMHLPQFGRALITVKDADKAEATALAKRFREVGYQLVATSGTAKAFEKAGITVSTIEKL 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACH4 (Carbamoyl-phosphate synthase large chain OS=Lactobacillus helveticus (strain DPC 4571) GN=carB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 6.085e-26 Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LN G+MN Q+ I GD Y++E NPRASRTVPF+SK G +A+ A V+ G+SL G+ + P+ +SVK V F K D LGPEM STG Sbjct: 811 LNCKGIMNIQF-IVRDGDVYVIEVNPRASRTVPFLSKITGIEMAQVATRVIMGESLEQQGYADGLAPEPEMISVKAPVFSFSKLADVDSYLGPEMKSTG 908 HSP 2 Score: 55.8398 bits (133), Expect = 6.085e-26 Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D +F A KA A +LP +G V L++ D K + IA+ F IG+ I +T GTA+F++ + VE V K+ Sbjct: 909 EVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDRDKEKILPIAKRFARIGYRIFATKGTANFLKKNDLHVELVTKV 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACDB (Carbamoyl-phosphate synthase large chain OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=carB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 6.085e-26 Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LN G+MN Q+ I GD Y++E NPRASRTVPF+SK G +A+ A V+ G+SL G+ + P+ +SVK V F K D LGPEM STG Sbjct: 811 LNCKGIMNIQF-IVRDGDVYVIEVNPRASRTVPFLSKITGIEMAQVATRVIMGESLEQQGYADGLAPEPEMISVKAPVFSFSKLADVDSYLGPEMKSTG 908 HSP 2 Score: 55.8398 bits (133), Expect = 6.085e-26 Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D +F A KA A +LP +G V L++ D K + IA+ F IG+ I +T GTA+F++ + VE V K+ Sbjct: 909 EVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDRDKEKILPIAKRFARIGYRIFATKGTANFLKKNDLHVELVTKV 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_LACJO (Carbamoyl-phosphate synthase large chain OS=Lactobacillus johnsonii GN=carB PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.919e-26 Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVI--PKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 LN G+MN Q+ I +G+ Y++E NPRASRTVPF+SK G +A+ A V+ G+SL G++ + P+ +SVK V F K D LGPEM STG Sbjct: 811 LNCVGIMNIQF-IVRNGEVYVIEVNPRASRTVPFLSKITGIEMAQVATRVIMGESLAQQGYSDGLAPEPEMISVKAPVFSFSKLADVDSYLGPEMKSTG 908 HSP 2 Score: 56.225 bits (134), Expect = 7.919e-26 Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIVSTSGTAHFVELKGIAVERVLKM 531 EVMG D +F A KA A +LP +G V L++ D K + IA+ F IG+ I +T GTA F++ G+ V+ V K+ Sbjct: 909 EVMGSDHTFAKALYKAFAGAKMQLPENGNVLLTIEDKDKEKILPIAKRFARIGYRIFATKGTADFLKNNGLHVDLVTKV 987
BLAST of CX287284 vs. ExPASy Swiss-Prot
Match: CARB_DEIDV (Carbamoyl-phosphate synthase large chain OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=carB PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.031e-25 Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 2 Query: 5 LNVCGLMNCQYAITTSGDAYLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLNDLGFTKEVIPKHVSVKEAVLPFEKFQGWDVLLGPEMISTG 295 L V GLMN Q+A+ G AY+LEANPRASRTVPFVSKA+ HPLAK AA + G +L +G T+ SVKE LPF KF+G +LGPEM STG Sbjct: 813 LGVRGLMNVQWAVK-DGTAYILEANPRASRTVPFVSKAVNHPLAKSAARIAVGHTLEQIGLTETPEAAMYSVKEVHLPFLKFKGVSPILGPEMKSTG 908 HSP 2 Score: 33.4982 bits (75), Expect = 1.031e-25 Identity = 22/57 (38.60%), Postives = 29/57 (50.88%), Query Frame = 1 Query: 295 EVMGIDMSFPIAFAKAQIAAGQKLPLSGTVFLSLNDLTKPHLERIAEAFLDIGFTIV 465 E MGID +AF +AQ+ A LPLSGT L L D L+ +A G ++ Sbjct: 909 ESMGIDADPYLAFYRAQLGAKSYLPLSGTALL-LGD----GLDEVASTLQGAGLNVI 960 The following BLAST results are available for this feature:
BLAST of CX287284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287284 ID=CX287284; Name=CX287284; organism=Citrus clementina; type=EST; length=533bpback to top |