CX287286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43 Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID +G LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PV Sbjct: 59 EWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV 165
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.362e-42 Identity = 81/107 (75.70%), Postives = 100/107 (93.46%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D + +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++P+ Sbjct: 33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPI 138
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 8.825e-42 Identity = 84/105 (80.00%), Postives = 96/105 (91.43%), Query Frame = 1 Query: 211 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID +G LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PV Sbjct: 1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPV 105
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.403e-39 Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L + LKDEV+KI PVQKQT AGQRTRFKAFV +GD GHVGLGVKCSKEVATAIRGAI+ AKL+V+PV Sbjct: 56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPV 161
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 5.354e-39 Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W PVTKLGRLV G + ++ +IYL SLPIKEYQIID + LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVIPV Sbjct: 49 WTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPV 152
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 2.657e-38 Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+ L+DEVM I PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR II+AKLSVIP+ Sbjct: 35 WVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPI 139
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 8.846e-34 Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +WVP TKLGRLV+ K+ SLE+I+L S+PIKE+QI+DTLI KL DE+MKI PVQK T AGQRTRFKAF VVGD DGH+G+G + KEV+ AIR ++I AKL+++PV Sbjct: 44 EWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPV 151
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.035e-21 Identity = 52/107 (48.60%), Postives = 76/107 (71.03%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P T +GRLV+EG+IRSL +I+ +LPI E +I+D LIG +LK E + + VQK T AG+ RF+ VV+G+ +G VG+G ++++A AI AI AKL++IPV Sbjct: 11 EWQPRTYVGRLVKEGRIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPV 117
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.465e-20 Identity = 50/106 (47.17%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T+LGRLV+EGKIR++++I+ ++ IKE +I+D L+ LK E++ I VQ+QT AG+R++F+ V VG+ DG+VG+G+ +K+V AI A+ AKL++ PV Sbjct: 9 WEPRTELGRLVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPV 113
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20 Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +WVP T+LG+LV G+I+++ + LP+KEY+I+D L+ + LKDEV+ I Q+ T +G+R + VVVG+ DG+VGLG+ SKE A AIR A+I AKL+++ + Sbjct: 4 EWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEI 109 The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bpback to top |