CX287286

Overview
NameCX287286
Unique NameCX287286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20
Identity = 50/106 (47.17%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T LGR+V+EGKIR++++I+ ++L IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  S++V  AI  A   AKL++ PV
Sbjct:    9 WEPKTALGRMVKEGKIRTIDEIFANNLLIKEPEIVDILLPG-LKQELLNLNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPV 113          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.263e-20
Identity = 48/106 (45.28%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LGR+V+EGKIR++++++ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R+ F+A V VG+ DG+VG+G+  +++V  AI  A+  AKL++IPV
Sbjct:    9 WEPRTELGRMVKEGKIRTIDEVFANNYIIKEPEIVDILVPG-LKQELLNVNIVQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPV 113          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.262e-20
Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T++GRLV+EGKI+S+++I+  +LPI E +I+D L+   L  EV+ +  VQK T AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPV
Sbjct:   14 WQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPV 118          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.567e-20
Identity = 52/107 (48.60%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TK+G+LV+EGKI S++++Y  ++ I E +IID L+ + +K EV+ I  VQKQT AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPV
Sbjct:   12 EWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPV 117          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.270e-20
Identity = 48/106 (45.28%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LGR+V+EGKIR++++I+ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  +++V  AI  A   AKL+++PV
Sbjct:   25 WEPRTELGRMVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQELLNVNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPV 129          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W+P T+LG++V EGKI ++E+ +   LPIKEYQI+D L+   L DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V
Sbjct:   12 WIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKV 116          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + +KDEV+ I   Q+ T +G+R  +   VVVG+ DG++GLG+  SKE A AIR A+I AKL+++ +
Sbjct:    4 EWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEI 109          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 50/107 (46.73%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TK+G+LV+EGKI S+++I+  + PI E +I+D L+  KLK EVM I  VQKQT AG+ +++K  +V+G+ DG+V  G   +K++  AI+ AI  AK+++IPV
Sbjct:   12 EWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPV 117          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19
Identity = 47/107 (43.93%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P T LGRLV EGKI+S+++++  ++PI+E +IIDTL+   LK EV+ +  VQ+QT +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++PV
Sbjct:    4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLLPG-LKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPV 109          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19
Identity = 49/107 (45.79%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P T +G LV+EGKI S+++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK+++IPV
Sbjct:   12 EWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPV 117          
The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_PYRCJ2.499e-2047.1730S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_PYRAR3.263e-2045.2830S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]
RS5_AERPE4.262e-2050.0030S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]
RS5_METS55.567e-2048.6030S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_PYRAE7.270e-2045.2830S ribosomal protein S5P OS=Pyrobaculum aerophilu... [more]
RS5_UNCMA1.240e-1948.1130S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_THEVO1.240e-1943.9330S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]
RS5_SULTO1.240e-1946.7330S ribosomal protein S5P OS=Sulfolobus tokodaii G... [more]
RS5_THEPD1.620e-1943.9330S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_SULSO1.620e-1945.7930S ribosomal protein S5P OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionC01006H03SK Veg1 Citrus clementina cDNA clone C01006H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bp
GAATTCGGCACGAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAA
CCCTAGCTTCAATCCCTAAACACACAAGAACAAAACCATGGCTGAACGAG
GTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGC
GACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGA
AGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCA
AGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAG
TATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCAT
GAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGT
TCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGC
GTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATT
GGCGAAGCTGTCAGTGATTCCGGTG
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