CX287286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20 Identity = 50/106 (47.17%), Postives = 77/106 (72.64%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T LGR+V+EGKIR++++I+ ++L IKE +I+D L+ LK E++ + VQ+QT AG+R +F+A V VG+ DG+VG+G+ S++V AI A AKL++ PV Sbjct: 9 WEPKTALGRMVKEGKIRTIDEIFANNLLIKEPEIVDILLPG-LKQELLNLNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPV 113
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 3.263e-20 Identity = 48/106 (45.28%), Postives = 79/106 (74.53%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T+LGR+V+EGKIR++++++ ++ IKE +I+D L+ LK E++ + VQ+QT AG+R+ F+A V VG+ DG+VG+G+ +++V AI A+ AKL++IPV Sbjct: 9 WEPRTELGRMVKEGKIRTIDEVFANNYIIKEPEIVDILVPG-LKQELLNVNIVQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPV 113
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.262e-20 Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T++GRLV+EGKI+S+++I+ +LPI E +I+D L+ L EV+ + VQK T AG+ TRF+A VVVG+ DG+VGLG +++ AI AI AKL++IPV Sbjct: 14 WQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPV 118
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.567e-20 Identity = 52/107 (48.60%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P TK+G+LV+EGKI S++++Y ++ I E +IID L+ + +K EV+ I VQKQT AG+ +R+K VV+G+ DG+V +GV SK++ AI+ AI AK+ VIPV Sbjct: 12 EWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPV 117
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.270e-20 Identity = 48/106 (45.28%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T+LGR+V+EGKIR++++I+ ++ IKE +I+D L+ LK E++ + VQ+QT AG+R +F+A V VG+ DG+VG+G+ +++V AI A AKL+++PV Sbjct: 25 WEPRTELGRMVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQELLNVNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPV 129
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19 Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W+P T+LG++V EGKI ++E+ + LPIKEYQI+D L+ L DEV+ I VQ+ T +G+R +F+ VVVG+ +G+VGL +V AIR AI AKL++I V Sbjct: 12 WIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKV 116
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19 Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P T+LG+LV G+I+++ + LP+KEY+I+D L+ + +KDEV+ I Q+ T +G+R + VVVG+ DG++GLG+ SKE A AIR A+I AKL+++ + Sbjct: 4 EWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEI 109
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19 Identity = 50/107 (46.73%), Postives = 77/107 (71.96%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P TK+G+LV+EGKI S+++I+ + PI E +I+D L+ KLK EVM I VQKQT AG+ +++K +V+G+ DG+V G +K++ AI+ AI AK+++IPV Sbjct: 12 EWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPV 117
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19 Identity = 47/107 (43.93%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P T LGRLV EGKI+S+++++ ++PI+E +IIDTL+ LK EV+ + VQ+QT +G+ ++++ V VG+ DG+VG+G+ S+++ AI A AKL+++PV Sbjct: 4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLLPG-LKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPV 109
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19 Identity = 49/107 (45.79%), Postives = 77/107 (71.96%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P T +G LV+EGKI S+++++ +LPI E +I+D L+ KLK EV+ I VQKQT AG+ +R+K V++G+ DG+V +G +K++ AI+ AI AK+++IPV Sbjct: 12 EWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPV 117 The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bpback to top |