CX287286

Overview
NameCX287286
Unique NameCX287286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19
Identity = 48/106 (45.28%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            WVP TKLGRLV +GKI+++++    +LP+KE +I+D L+   L+D+V++I  VQ+ T +G+RT+F+   VVG+ +G+VG+G   + +VA AI+ AI  AKL++  V
Sbjct:    5 WVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKV 109          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.038e-19
Identity = 47/107 (43.93%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P T +G LV+ GKI S+++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK++++PV
Sbjct:   12 EWKPRTSIGNLVKNGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPV 117          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.038e-19
Identity = 49/104 (47.12%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 516
            +W+P T+LG+LV EG++ S+E+     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +
Sbjct:    6 EWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDI 108          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.038e-19
Identity = 49/107 (45.79%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +WVP T++GR+V+EGKI S+ +++  +LPI E +I+D L+   LK EV+ +  VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PV
Sbjct:    9 EWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPV 114          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 47/107 (43.93%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W+P T+LGRLV EG++ + E+     LPIKE+QIID L+   L+DEV+ I  VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+ +
Sbjct:    9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRI 114          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TKLGR+V+EG+I+++++++     I E +I+D L+   L++EV+ +  VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I V
Sbjct:    9 EWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKV 114          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 46/107 (42.99%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+ I  VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ V
Sbjct:    7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKV 112          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 45/106 (42.45%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P TK+G+L++EGKI S+++++  +LPI E +I+D L+  KL+ +++ I  VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPV
Sbjct:   13 WKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPV 117          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 516
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNI 108          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 516
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNI 108          
The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_ARCFU1.620e-1945.2830S ribosomal protein S5P OS=Archaeoglobus fulgidu... [more]
RS5_SULIN8.038e-1943.9330S ribosomal protein S5P OS=Sulfolobus islandicus... [more]
RS5_METBF8.038e-1947.1230S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_IGNH48.038e-1945.7930S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]
RS5_METTP1.791e-1843.9330S ribosomal protein S5P OS=Methanosaeta thermoph... [more]
RS5_METKA1.791e-1843.9330S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_METHJ1.791e-1842.9930S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_SULAC2.339e-1842.4530S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_METMA2.339e-1847.5730S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METAC2.339e-1847.5730S ribosomal protein S5P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionC01006H03SK Veg1 Citrus clementina cDNA clone C01006H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bp
GAATTCGGCACGAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAA
CCCTAGCTTCAATCCCTAAACACACAAGAACAAAACCATGGCTGAACGAG
GTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGC
GACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGA
AGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCA
AGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAG
TATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCAT
GAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGT
TCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGC
GTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATT
GGCGAAGCTGTCAGTGATTCCGGTG
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