CX287286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17 Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P T+LGRLV+EG I S+++I+ PI E +IID L+ L++EV+ + VQ+ ++G++ F+ V VG+ DG+VGLG ++EV AIR A+ AK ++I V Sbjct: 9 EWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKV 114
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17 Identity = 46/107 (42.99%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P T +GR+V+EG+I ++ I ++LPI E +I+D L+ L+++V+ + VQ+ ++G+R RF+A VVVG+ +G+VG+G +KEV AIR AI AK ++I V Sbjct: 7 EWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRV 112
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17 Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T++GR+V+EG I + I LP+ E +I+D L+ L+++V+ + VQ+ ++G+R R++A V VG+ +G+VG+G+ SKEV AIR AI AKLS+I V Sbjct: 20 WEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKV 124
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17 Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P TKLG +V+EG+I + +I+ IKE +IID L + + EV+ I + T +G+R RF+ VG+ DG+VGLG+ KEV AIR AI AKL++I + Sbjct: 15 EWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEI 124
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17 Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH---KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P TKLGRLV+EG+I + +I+ IKE +I+D L+ + EV+ I + T +G+R RF+ VG+ DG+VGLG+ +EV AIR AI AK+++I + Sbjct: 14 EWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLLPEVNLRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEI 123
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16 Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P TKLG LV+EG+I + +I+ IKE +IID L + + E++ I + T +G+R RF+ VG+ DG+VGLG+ +EV AIR AI AKL++I + Sbjct: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEI 124
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16 Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T++G+ V+EG I ++ I + LP+ E +I+D L+ L+++V+ + VQ+ ++G+R RF+A VVG+ +G VG+G+ SKEV AIR AI AKLS+I V Sbjct: 13 WEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKV 117
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.189e-16 Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W P TKLG LV+EG+I + +I+ IKE +IID L + + E++ I + T +G+R RF+ VG+ DG+VGLG+ +EV AIR AI AKL++I + Sbjct: 15 EWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEI 124
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.189e-16 Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 W P T+LGR V++G+I ++QI LPI E +I+D L+ L++EVM + VQ+ ++G++ F+ V VG+ +G+VGLG S+EV AIR A+ AK ++I V Sbjct: 22 WEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKV 126
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16 Identity = 42/107 (39.25%), Postives = 71/107 (66.36%), Query Frame = 1 Query: 205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525 +W PVT LG+ V G+I+S++Q+ PIKE +I+D + L+DEV+ I +Q+ T +G+R +F+A V+VG+ +G++G G +V AI+ AI AK++++ V Sbjct: 7 EWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKV 112 The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bpback to top |