CX287286

Overview
NameCX287286
Unique NameCX287286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P T+LGRLV+EG I S+++I+    PI E +IID L+   L++EV+ +  VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I V
Sbjct:    9 EWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKV 114          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 46/107 (42.99%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P T +GR+V+EG+I  ++ I  ++LPI E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V
Sbjct:    7 EWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRV 112          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A V VG+ +G+VG+G+  SKEV  AIR AI  AKLS+I V
Sbjct:   20 WEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKV 124          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TKLG +V+EG+I  + +I+     IKE +IID L   +  +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   KEV  AIR AI  AKL++I +
Sbjct:   15 EWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEI 124          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH---KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TKLGRLV+EG+I  + +I+     IKE +I+D L+     +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AK+++I +
Sbjct:   14 EWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLLPEVNLRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEI 123          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I +
Sbjct:   15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEI 124          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T++G+ V+EG I  ++ I  + LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A  VVG+ +G VG+G+  SKEV  AIR AI  AKLS+I V
Sbjct:   13 WEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKV 117          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.189e-16
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I +
Sbjct:   15 EWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEI 124          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.189e-16
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LGR V++G+I  ++QI    LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   S+EV  AIR A+  AK ++I V
Sbjct:   22 WEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKV 126          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16
Identity = 42/107 (39.25%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W PVT LG+ V  G+I+S++Q+     PIKE +I+D  +   L+DEV+ I  +Q+ T +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ V
Sbjct:    7 EWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKV 112          
The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_METTH4.411e-1742.9930S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METJA4.411e-1742.9930S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_METM55.760e-1743.4030S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_PYRFU7.523e-1741.8230S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_PYRKO9.826e-1740.9130S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_PYRAB1.676e-1640.9130S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]
RS5_META31.676e-1643.4030S ribosomal protein S5P OS=Methanococcus aeolicu... [more]
RS5_PYRHO2.189e-1640.9130S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]
RS5_METST2.189e-1642.4530S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_METB68.318e-1639.2530S ribosomal protein S5P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionC01006H03SK Veg1 Citrus clementina cDNA clone C01006H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bp
GAATTCGGCACGAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAA
CCCTAGCTTCAATCCCTAAACACACAAGAACAAAACCATGGCTGAACGAG
GTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGC
GACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGA
AGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCA
AGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAG
TATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCAT
GAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGT
TCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGC
GTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATT
GGCGAAGCTGTCAGTGATTCCGGTG
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