CX287286

Overview
NameCX287286
Unique NameCX287286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I V
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDV 109          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ V
Sbjct:    8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKV 112          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V
Sbjct:   11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISV 115          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.392e-15
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  205 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            +W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V
Sbjct:    6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKV 124          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.392e-15
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LG+ V EG+I S+++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL++I V
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDV 111          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V
Sbjct:    7 WQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDV 111          
BLAST of CX287286 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  208 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV 525
            WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P+
Sbjct:   27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPI 131          
The following BLAST results are available for this feature:
BLAST of CX287286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_NATPD1.086e-1541.5130S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_METLZ1.086e-1542.4530S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_HALWD3.161e-1539.6230S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_NANEQ5.392e-1539.1730S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_HALMA5.392e-1540.5730S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_HALSA1.201e-1439.6230S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_CENSY1.124e-1242.4530S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionC01006H03SK Veg1 Citrus clementina cDNA clone C01006H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287286 ID=CX287286; Name=CX287286; organism=Citrus clementina; type=EST; length=525bp
GAATTCGGCACGAGGGTCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAA
CCCTAGCTTCAATCCCTAAACACACAAGAACAAAACCATGGCTGAACGAG
GTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGC
GACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGA
AGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCA
AGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAG
TATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGACGAGGTCAT
GAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGAGGACGAGGT
TCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGC
GTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCGCTATCATATT
GGCGAAGCTGTCAGTGATTCCGGTG
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